PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018676.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 319aa    MW: 35944.4 Da    PI: 4.8574
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018676.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.85.2e-27958150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtfskRrng++KKA+EL +LCd+++a+i+fs++g+l  +s
  CCG018676.1  9 KRIENNTNRQVTFSKRRNGLIKKAYELAILCDIDIALIMFSPSGRLSHFS 58
                 79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.506161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-29279IPR002100Transcription factor, MADS-box
CDDcd002651.28E-35279No hitNo description
PRINTSPR004041.1E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELAILCD IDIALIMFSP SGRLSHFSGK  60
RRLEDVIARY INMSEHDRDF SCGIQNREEI QLEARNLQHQ LYMAEEQLRL YEPDPLKITS  120
MMELESCEKT LLDTMARLEE RKKCILSNPA VSTYDPSSMQ MFLDTNGGMP DFENDIVSWL  180
PENGNNPSSV RVGSDQSSCV PVSNQSSMTL FDALSHATNN VNANHCNNME GSNINNSNSE  240
VFPSWYQAFS SLSSTELLSA FMPPTSFSAV KQENIAGPSF TSMLQQPQAE TTSNCLQMPS  300
STADQCSDYE NQIKQSKIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-17175174MEF2 CHIMERA
6byy_B2e-17175174MEF2 CHIMERA
6byy_C2e-17175174MEF2 CHIMERA
6byy_D2e-17175174MEF2 CHIMERA
6bz1_A2e-17175174MEF2 CHIMERA
6bz1_B2e-17175174MEF2 CHIMERA
6bz1_C2e-17175174MEF2 CHIMERA
6bz1_D2e-17175174MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460612.10.0agamous-like MADS-box protein AGL104 isoform X1
SwissprotQ1PFC22e-70AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLA0A2K1ZRF50.0A0A2K1ZRF5_POPTR; Uncharacterized protein
STRINGPOPTR_0007s05980.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.14e-57AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]