PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018721.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 339aa    MW: 37368.3 Da    PI: 7.62
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018721.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.86e-342175155
      G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  CCG018721.1 21 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 75
                 79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4851878IPR017930Myb domain
SuperFamilySSF466898.78E-182075IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-322076IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-252176IPR006447Myb domain, plants
PfamPF002491.4E-92374IPR001005SANT/Myb domain
PfamPF143791.1E-9107128IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
PfamPF143794.3E-9162187IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAMDPINGGN NLNNNPNLAS KQRLRWTHEL HERFVDAVAQ LGGPDRATPK GVLRVMGVQG  60
LTIYHVKSHL QKYRLAKYLP DSSSDGKKAD KKETGDVISN LDGSSGMQIT EALKLQMEVQ  120
KRLHEQLEAC FPCTRHLINW FIIIVFPHHA IMCGDFYARV SKVQRQLQLR IEAQGKYLKK  180
IIEEQQRLSG VLEDVPGSGV AAPASGDNCP ESDKTDPATP APTSESPLQD KAAKERAPAK  240
SLSIDESFSS QPEPLTPDSR CNAGSPAESP RGERSIKKQR VSMGVTYGKQ EMVLTHQILE  300
SSLNSYPRPH SAFLGREQFD PSSGLSIEDQ MEKVSGSDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-242178158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-242178158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-242178158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-242178158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2248471e-178CU224847.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005787.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
RefseqXP_011005788.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
RefseqXP_011005790.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
SwissprotQ9SJW01e-124PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A2K1ZUI10.0A0A2K1ZUI1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s00290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86103343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-117G2-like family protein