PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018919.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 303aa    MW: 33652.1 Da    PI: 9.5159
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018919.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-10112154345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +WT +E+el++ + +++G+g+  +I++++ k++ l q+k++ +
      CCG018919.1 112 AWTDQEHELFLMGLRKYGTGNHGKISKKFVKTKNLQQVKNHAN 154
                      8****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014473.14E-52636No hitNo description
PROSITE profilePS5129310.801108161IPR017884SANT domain
SMARTSM007172.0E-4109159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-6110162IPR009057Homeodomain-like
PfamPF002498.6E-7112154IPR001005SANT/Myb domain
CDDcd001672.63E-6112157No hitNo description
SuperFamilySSF466891.96E-9113161IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MENQSDASKS PLSPPKPKEK HIRFNPPPPP PPPPPPSPPS KINIEGPHLP MIKDNVSCLR  60
GTVEPVRRPN MNGKNKNIDF NMHRKMENYE KMITEGVKKF VQEYYKKNPD DAWTDQEHEL  120
FLMGLRKYGT GNHGKISKKF VKTKNLQQVK NHANLVFQHL KSSTRKGPNN KVGVEKYDPA  180
AANIASTSYV VVPDVADAAS GTNGVVEPET NAIVVDQIIA TTNRTTPMDL FPTSEPKPTL  240
IMFPVTAPTF PVRSETGSSD VPPNYAHKSN LQDTLTHGST GGGDFFPSYG ELDLDLRLGS  300
WYW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023465.11e-161PREDICTED: transcription factor MYB1R1-like
TrEMBLA0A2K2BKE41e-107A0A2K2BKE4_POPTR; Uncharacterized protein
STRINGPOPTR_0002s17760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2821333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.15e-11MYB family protein