PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018958.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 177aa    MW: 19360.8 Da    PI: 6.5093
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018958.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-181868155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  CCG018958.1 18 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAYCLKG 68
                 68*****887.**********843...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-121868IPR001471AP2/ERF domain
SMARTSM003801.0E-341982IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-301977IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-201977IPR016177DNA-binding domain
PROSITE profilePS5103223.0371976IPR001471AP2/ERF domain
PRINTSPR003672.4E-122031IPR001471AP2/ERF domain
CDDcd000187.72E-302077No hitNo description
PRINTSPR003672.4E-125878IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MTRLQIPDAT RGSGTRHPVY RGVRKRRWGK WVSEIREPRK KSRIWLGSFP VPEMAAKAYD  60
VAAYCLKGCK AQLNFPEEVD DLPIPSTCTA RDIQAAAAKA AHSVLIPMKK SSETNSGGGS  120
DGEVAGDDFW GEIELPELLL SNSGYSWDSC GWNTTLASDN STWQPDGEGL QPSMACL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-191180676Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485410.0EF148541.1 Populus trichocarpa x Populus deltoides clone WS0133_J24 unknown mRNA.
GenBankEF1559310.0EF155931.1 Populus trichocarpa TINY-like protein (TINYL12) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023164.11e-130PREDICTED: ethylene-responsive transcription factor ERF023-like
RefseqXP_011023166.11e-130PREDICTED: ethylene-responsive transcription factor ERF023-like
RefseqXP_011023167.11e-130PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI29e-61ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA9PJF31e-117A9PJF3_9ROSI; Uncharacterized protein
TrEMBLA9PL821e-117A9PL82_POPTR; TINY-like protein
STRINGPOPTR_0855s00200.11e-117(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.14e-62ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]