PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019025.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 194aa MW: 21822 Da PI: 9.5016

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019025.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.7	2e-32	115	173	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r ++d+++v++tYeg H+h+ CCG019025.1 115 LDDGYRWRKYGQKAVKNSKYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGVHDHP 173 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.3E-33	101	173	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-28	108	174	IPR003657	WRKY domain
PROSITE profile	PS50811	28.667	110	175	IPR003657	WRKY domain
SMART	SM00774	1.5E-37	115	174	IPR003657	WRKY domain
Pfam	PF03106	1.3E-25	116	173	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MEGHEAPPSP PQLPQLAPSP NPSYLLTPLL LPSSSLPYPS IIEPQVLPDI DWAGLLSGQS 60 QLGEKRPVME SASMVAENGA GEEKGNKDEK KGGRMKKAPT RPRFAFQTRS ADDILDDGYR 120 WRKYGQKAVK NSKYPRSYYR CTHHTCNVKK QVQRLSKDTS IVVTTYEGVH DHPCEKLMET 180 LTPLLKQMQF LARF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-25	103	172	2	71	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ377439	0.0	GQ377439.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 19 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011023269.1	1e-144	PREDICTED: probable WRKY transcription factor 43
Swissprot	Q8VWQ4	6e-54	WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBL	B9GQD9	1e-112	B9GQD9_POPTR; Uncharacterized protein
STRING	EOX95854	6e-91	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3227	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46130.1	2e-55	WRKY DNA-binding protein 43