PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019037.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 361aa MW: 39811.4 Da PI: 7.6033

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019037.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.2	1.8e-13	90	134	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky CCG019037.1 90 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 134 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-16	84	140	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.408	85	139	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.7E-18	88	137	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.3E-6	88	140	IPR009057	Homeodomain-like
SMART	SM00717	5.3E-11	89	137	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-11	90	134	IPR001005	SANT/Myb domain
CDD	cd00167	2.47E-8	92	135	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MVSVNPNPDQ GFYFFDPMNN SNMGLPGLDS LPPPPTTTAA TPSITATATN TCNNTVSTVN 60 TNNNHNNTVM SFSEDSSKKI RKPYTITKSR ESWTEQEHDK FLEALQLFDR DWKKIEAFVG 120 SKTVIQIRSH AQKYFLKVQK SGTSEHVPPP RPKRKAAHPY PQKASKSAVV ASQATGLFQS 180 SSTLLEPGYL YRPDTISDLG NPITSGSSST WSYNSGPPVS MSQMTTDDAG LAGPTIPYNC 240 CYSSSNESTP RSWQTGKIID NKDQGKSERV MPDFAQVYSF IGSVFDPNAR DHLQRLKQMD 300 PINLETVVLL MRNLSINLTS PEFEDHRRLL ASYHVDSPKE NAGGSYSNCS VDNLGNPIPA 360 M

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MVSVNPNPDQ GFYFFDPMNN SNMGLPGLDS LPPPPTTTAA TPSITATATN TCNNTVSTVN  60
TNNNHNNTVM SFSEDSSKKI RKPYTITKSR ESWTEQEHDK FLEALQLFDR DWKKIEAFVG  120
SKTVIQIRSH AQKYFLKVQK SGTSEHVPPP RPKRKAAHPY PQKASKSAVV ASQATGLFQS  180
SSTLLEPGYL YRPDTISDLG NPITSGSSST WSYNSGPPVS MSQMTTDDAG LAGPTIPYNC  240
CYSSSNESTP RSWQTGKIID NKDQGKSERV MPDFAQVYSF IGSVFDPNAR DHLQRLKQMD  300
PINLETVVLL MRNLSINLTS PEFEDHRRLL ASYHVDSPKE NAGGSYSNCS VDNLGNPIPA  360
M

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF468481	2e-72	EF468481.1 Medicago truncatula MYB transcription factor MYB40 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011023280.1	0.0	PREDICTED: protein REVEILLE 5-like
Swissprot	C0SVG5	1e-108	RVE5_ARATH; Protein REVEILLE 5
TrEMBL	A0A2K2BJT1	0.0	A0A2K2BJT1_POPTR; Uncharacterized protein
STRING	POPTR_0002s16460.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1119	33	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01280.2	6e-88	MYB_related family protein

Publications ? help Back to Top
Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]