PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019165.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SBP

Protein Properties

Length: 1002aa MW: 110956 Da PI: 6.4263

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019165.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.6	1.3e-41	150	227	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C +dls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ CCG019165.1 150 VCQVEDCGVDLSNAKDYHRRHKVCEMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 227 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.6E-33	146	212	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.308	148	225	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.62E-39	149	230	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.7E-30	151	224	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	6.1E-7	302	356	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.51E-7	776	886	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	6.1E-7	779	887	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.66E-7	779	886	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1002 aa Download sequence Send to blast
MEARFGGEAH HFYAMGPTDM RAVGKRGLEW DLNDWKWDGD LFIASPLNPV PSTSVRRPFF 60 PLGVGTGVPA TGNSTNSSSS CSDEVNLGVE KGKRELEKRR RVVVIEDDNL NDQETGGLSL 120 KLGGQRDAGN WEGSSGKKTK LVGGGLSRAV CQVEDCGVDL SNAKDYHRRH KVCEMHSKAS 180 KALVGNVMQR FCQQCSRFHV LQEFDEGKRS CRRRLAGHNK RRRKTNPDTV GNGSSMNDDQ 240 NSGYLLISLL RILSNMHSNR SDETTDQDLL THLLRSLATH SVEHGGRNMF GPLQEPRDLS 300 TSFGNSEVVS TLLSNGEGPS NLKQPLTVPV SGMPQQVVPV HDAYGANIQT TSSLKPSIPN 360 NFAVYSEVRE STAGQVKMNN FDLNDIYVDS DDGAEDIERS PAPVNARTSS LDCPSWVQQD 420 SHQSSPPQTS RNSDSASAQS PSSSSGEAQS RTDRIVFKLF GKEPNDFPLV LRAQILDWLS 480 HSPTDIESYI RPGCIILTIY LHQAEAAWEE LCCGLGSSLS RLLDVSDDTF WRTGWIYIRV 540 QHQIAFVYNG QVVVDTSLPL TSNNYSKILS VKPIAITASE RAEFLIKGVN LSRPATRLLC 600 AVEGNYMVQE NTQEVMDGVD SFKGHDEVQC VNFSCSIPMV TGRGFIEIED HGFSSSFFPF 660 LVAEEDVCSE IRMLEGVLET ETDADFEETE KMAAKNQAMN FVHEMSWLLH RSQLKSRLGC 720 SDPSMNLFPL RRFKWLMEFS MDHEWCAVVG KLLSILHNGI VGTEEHSSLN VALSEMGLLH 780 RAVRRNSRSL VELLLRYVPE KFGSKDKALV GGSHESILFR PDVTGPAGLT PLHIAAGKDG 840 SEDVLDILTE DPGMVGIEAW KNALDSTGFT PEDYARLRGH YTYIHLVQRK INKRQAVGGH 900 VVLDIPSNLS NSNINVKQNE GLSSSFEIGR TALRPTQRNC KLCSQKVVYG IASRSQLYRP 960 AMLSMVAIAA VCVCVALLFK SCPEVLYVFR PFRWEMLDYG TS

Sequence ? help Back to Top

Protein Sequence Length: 1002 aa Download sequence Send to blast

MEARFGGEAH HFYAMGPTDM RAVGKRGLEW DLNDWKWDGD LFIASPLNPV PSTSVRRPFF  60
PLGVGTGVPA TGNSTNSSSS CSDEVNLGVE KGKRELEKRR RVVVIEDDNL NDQETGGLSL  120
KLGGQRDAGN WEGSSGKKTK LVGGGLSRAV CQVEDCGVDL SNAKDYHRRH KVCEMHSKAS  180
KALVGNVMQR FCQQCSRFHV LQEFDEGKRS CRRRLAGHNK RRRKTNPDTV GNGSSMNDDQ  240
NSGYLLISLL RILSNMHSNR SDETTDQDLL THLLRSLATH SVEHGGRNMF GPLQEPRDLS  300
TSFGNSEVVS TLLSNGEGPS NLKQPLTVPV SGMPQQVVPV HDAYGANIQT TSSLKPSIPN  360
NFAVYSEVRE STAGQVKMNN FDLNDIYVDS DDGAEDIERS PAPVNARTSS LDCPSWVQQD  420
SHQSSPPQTS RNSDSASAQS PSSSSGEAQS RTDRIVFKLF GKEPNDFPLV LRAQILDWLS  480
HSPTDIESYI RPGCIILTIY LHQAEAAWEE LCCGLGSSLS RLLDVSDDTF WRTGWIYIRV  540
QHQIAFVYNG QVVVDTSLPL TSNNYSKILS VKPIAITASE RAEFLIKGVN LSRPATRLLC  600
AVEGNYMVQE NTQEVMDGVD SFKGHDEVQC VNFSCSIPMV TGRGFIEIED HGFSSSFFPF  660
LVAEEDVCSE IRMLEGVLET ETDADFEETE KMAAKNQAMN FVHEMSWLLH RSQLKSRLGC  720
SDPSMNLFPL RRFKWLMEFS MDHEWCAVVG KLLSILHNGI VGTEEHSSLN VALSEMGLLH  780
RAVRRNSRSL VELLLRYVPE KFGSKDKALV GGSHESILFR PDVTGPAGLT PLHIAAGKDG  840
SEDVLDILTE DPGMVGIEAW KNALDSTGFT PEDYARLRGH YTYIHLVQRK INKRQAVGGH  900
VVLDIPSNLS NSNINVKQNE GLSSSFEIGR TALRPTQRNC KLCSQKVVYG IASRSQLYRP  960
AMLSMVAIAA VCVCVALLFK SCPEVLYVFR PFRWEMLDYG TS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-30	150	224	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	101	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011005939.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1 isoform X1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	B9GSZ5	0.0	B9GSZ5_POPTR; Uncharacterized protein
STRING	POPTR_0002s18970.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]