PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019243.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 81aa    MW: 9200.45 Da    PI: 7.3447
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019243.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.42.7e-10149149
          NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
                 +p G+rF P+d+ lv +yL k+ ++++l++  +++e+++y  eP+++ k
  CCG019243.1  1 MPTGCRFAPSDDVLVIHYLSKEGKNEPLPCLYAVRECNLYGREPEEIWK 49
                 699***************************999************9964 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-8151IPR003441NAC domain
PROSITE profilePS5100510.018181IPR003441NAC domain
PfamPF023653.2E-4250IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MPTGCRFAPS DDVLVIHYLS KEGKNEPLPC LYAVRECNLY GREPEEIWKE FGGDRLKRKI  60
DQDLGLSSFT RLKKSGTDHG S
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840741e-108AC184074.2 Populus trichocarpa clone Pop1-51H15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464534.12e-46NAC domain-containing protein 83
TrEMBLA0A3N7FCU84e-45A0A3N7FCU8_POPTR; Uncharacterized protein
STRINGPOPTR_0001s22770.11e-45(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-07NAC domain containing protein 25