PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019421.3
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 672aa    MW: 74520.6 Da    PI: 8.0487
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019421.3genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.28.8e-09557605348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
      CCG019421.3 557 AWTLSEVMKLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 605
                      7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.225550609IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-13552611IPR009057Homeodomain-like
SMARTSM007172.9E-9554607IPR001005SANT/Myb domain
SuperFamilySSF466894.86E-16556615IPR009057Homeodomain-like
CDDcd116604.59E-19556606No hitNo description
PfamPF002498.1E-7557605IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
METEVGVEGN DEAKHKECGI RKSSSSLSSP KQISDPVVYK LVRVEGDGRL VPATDDELME  60
VESLLIDDRC GLHVVADPSR CGMHVVADPG QTVGCISNEG SSSGMAQLKR LEGWSQPENK  120
KVDPDKLNGR LEYIEEMLQK VKEEERLYIA CGSPDCSSAY VIVDSQCSDP HDKLLHIDEK  180
LQCEIPLQEP VRLLAPSLCE SHLNQSGSVG ECSHPPDELV AGESPLSITT KPDFSRLKGE  240
ICLDNLSIKE LHETFKATFG RETTVKDKQW LKRRISMGLT NSCDVSTTSF IIKDNKFVKK  300
GNEEGCNGMY GSFAKDPPIV NQKGLPACHV GQLDYHKVVP ERRLENHNLD DNSGSDDHQK  360
EQRAAKRVRK PTKRYIEELS EVESKESNER LLNLAKNSGH DRLISPKSHV RLVRNVSSGG  420
RTVITRLDSL GGSGIQVPCV SRVRRSRPRK NFMALLKFNP SSMGMAAAMV EKALDDHGFP  480
PDDGNENRVL KARSTPEHVH HQFVGVPEKD KQFSVMSAVG LGNNMDLKCM NSNEDSDDNV  540
VTVPTPKGGI RRKHHRAWTL SEVMKLVEGV SRYGAGRWSE IKRLAFASYS YRTSVDLKDK  600
WRNLLKASFA QTPPDTGMNS RKNTGAMPIP TPILLKVREL AEKQAQVPPN LSLTKVAGSA  660
RKIVHEKQTG FL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1443449RRSRPRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0292441e-111CT029244.1 Poplar cDNA sequences.
GenBankCT0295441e-111CT029544.1 Poplar cDNA sequences.
GenBankCT0295451e-111CT029545.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035703.10.0PREDICTED: uncharacterized protein LOC105133411 isoform X1
TrEMBLB9GKV60.0B9GKV6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s17020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-136TRF-like 6