PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019429.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 521aa    MW: 58025.2 Da    PI: 6.433
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019429.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.17.8e-12271327155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  CCG019429.1 271 SRYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 327
                  79*******************433.44555535555.779999**************98 PP
2AP248.42.3e-15370421155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  CCG019429.1 370 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 421
                  78****************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-14271336IPR016177DNA-binding domain
CDDcd000181.36E-18271336No hitNo description
PfamPF008473.4E-9271327IPR001471AP2/ERF domain
PROSITE profilePS5103217.49272335IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-12272335IPR001471AP2/ERF domain
SMARTSM003801.9E-22272341IPR001471AP2/ERF domain
PRINTSPR003672.2E-6273284IPR001471AP2/ERF domain
PfamPF008474.0E-10370421IPR001471AP2/ERF domain
CDDcd000185.35E-24370431No hitNo description
SuperFamilySSF541711.57E-17370430IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-18371429IPR001471AP2/ERF domain
PROSITE profilePS5103218.769371429IPR001471AP2/ERF domain
SMARTSM003803.7E-32371435IPR001471AP2/ERF domain
PRINTSPR003672.2E-6411431IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MSNWLGFSLS PHLRVGEDFG REDQAASFSV MPLLSDESLC VADPFRRPSN GTPDWRYETD  60
MDEGRLSEDG PKLEDFLGCY SNSPSDETEV HCQQEDHHIN QNHAHGINAN IAPSFNTNKD  120
IETGKNSLTS HSSFIQSYHF NDNAQTLIPS DSLQHCDPNP SHSHSHSNNH NHNQETGMYH  180
VPFESASSFS GFKSWLRQTS TPFSSSGESP NEANNCNFQS LSLTVSPSSQ NGLVAISPWQ  240
VVDNSTRPVA KSLAKEPVSR KSIETFGQRT SRYRGVTRHR WTGRYEAHLW DNSCRKEGQT  300
RKGRQGGYDK EEKAARAYDL AALKYWGPTT HINFPVGTYE KELEEMEHMT RQEFVANLRR  360
KSSGFSRGAS VYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR  420
GASAVTNFGI SRYDVKRICS SSTLIASDLA KRSSEDSTPT TREDCNSCAS SSISPQPLLA  480
IAGCEASDEL PDMVWSANTG ESQQQQSVNN NNNESNTDGF K
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035716.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 isoform X2
SwissprotQ1PFE11e-134AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A2K2BZ110.0A0A2K2BZ11_POPTR; Uncharacterized protein
STRINGPOPTR_0001s16960.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-128AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]