PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019567.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 121aa MW: 13491.8 Da PI: 11.0545

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019567.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.2	6.2e-13	5	91	2	87
EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 kvl + + ++rl++p f+++ gg ++ + d sgr+W++++++r+++ v+++GW +v+++ Lk+gD v F +++ CCG019567.1 5 SKVLRK--TDIKKRLSVPTGFLSSLpsfkGGG--HAVDFQAVDGSGRVWTFRCSIRRNGHPkPVISRGWLAYVHSKSLKVGDKVQFLKEKN 91 566633..333457******9999886433..456788889999***8855544459*********************95554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	4.62E-18	3	92	No hit	No description
SuperFamily	SSF101936	6.08E-14	4	92	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0021	4	103	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.5E-16	4	93	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.8E-10	5	92	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MARFSKVLRK TDIKKRLSVP TGFLSSLPSF KGGGHAVDFQ AVDGSGRVWT FRCSIRRNGH 60 PKPVISRGWL AYVHSKSLKV GDKVQFLKEK NDAGAKMHAY EIRAEKEIKI FGAVFGYAPI 120 I

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213428	1e-159	AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011006364.1	1e-84	PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBL	A0A3N7FZQ5	7e-81	A0A3N7FZQ5_POPTR; Uncharacterized protein
STRING	POPTR_0015s01750.1	6e-78	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2060	7	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01500.1	8e-07	B3 family protein