PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019624.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 122aa MW: 14446.9 Da PI: 11.2058

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019624.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31	4.4e-10	9	90	4	83
E-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFk 83 +++ +++r+ +p+k +e++ g+ + + + +d+ g++W +k+++r+ ++ ++++ W+++++++gLk gD v + CCG019624.1 9 SV-SKSDATNNRMEFPRKSLENFpipAGQ--NYFNFVAMDTLGQRWGFKVSIRNVGRYkkPWMSGQWRRYAREKGLKKGDRVKLI 90 44.455556678******888877444..4578999********984444334599****************88765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	8.755	5	107	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.2E-12	6	90	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.73E-11	7	92	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.58E-11	8	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MEKVAMEKSV SKSDATNNRM EFPRKSLENF PIPAGQNYFN FVAMDTLGQR WGFKVSIRNV 60 GRYKKPWMSG QWRRYAREKG LKKGDRVKLI MHVEGNAVRS YRIMAERKLT MRIWIPVEDF 120 AR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011016151.1	2e-86	PREDICTED: uncharacterized protein LOC105119681
TrEMBL	U7DZ15	2e-77	U7DZ15_POPTR; Uncharacterized protein
STRING	POPTR_0183s00210.1	4e-78	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23094	2	3