PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019655.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 28853 Da    PI: 9.8608
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019655.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.61.4e-271058250
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 ri+n++ rqvtfskRr g+lKKA+ELSvLCdaev vi+fsstgkly+ +
  CCG019655.1 10 RIDNSTSRQVTFSKRRSGLLKKAKELSVLCDAEVGVIVFSSTGKLYDHA 58
                 8*********************************************876 PP
2K-box80.54e-2781171999
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  + +++ + +++e+a L+ke++ Lq+  R+l+Ge+L+ Ls+k+L++Le+qLeks+k +R kK+++l+++i+e+ +k +++ +en +L+kk+e
  CCG019655.1  81 NPASEVKFWKKEAASLRKELQCLQEYRRQLMGEELSGLSIKDLENLENQLEKSMKGVRIKKEQILTDEIKEMSQKGNRIYQENLELHKKVE 171
                  5578899**********************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.908161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-31277IPR002100Transcription factor, MADS-box
CDDcd002651.09E-41274No hitNo description
PRINTSPR004041.5E-27323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-251056IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-273859IPR002100Transcription factor, MADS-box
PfamPF014866.4E-2484170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.69186176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KAKELSVLCD AEVGVIVFSS TGKLYDHANT  60
SMKSIIERYS KQKEECQPLL NPASEVKFWK KEAASLRKEL QCLQEYRRQL MGEELSGLSI  120
KDLENLENQL EKSMKGVRIK KEQILTDEIK EMSQKGNRIY QENLELHKKV ELITQENAEL  180
RKVYREQNVD EANRASRSPY TVENGYDLHA PIRLQLSQPQ PHNSEAPASS MKLGHHPPHR  240
SKLNNEISSI I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-21174174MEF2C
5f28_B9e-21174174MEF2C
5f28_C9e-21174174MEF2C
5f28_D9e-21174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166761e-91AC216676.1 Populus trichocarpa clone POP046-B08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006369693.21e-159MADS-box transcription factor 23 isoform X1
RefseqXP_024443984.11e-159MADS-box transcription factor 23 isoform X1
SwissprotQ6EP494e-94MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A3N7EHI71e-157A0A3N7EHI7_POPTR; Uncharacterized protein
STRINGXP_002518331.11e-126(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.16e-95AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]