PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019717.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 305aa MW: 33800.9 Da PI: 10.1497

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019717.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.3	1.3e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI + R+ ++k++w++ CCG019717.1 5 KQKWTAEEEAALKAGVIKHGAGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 55 79*********************************88********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.605	1	63	IPR017930	Myb domain
SuperFamily	SSF46689	8.97E-15	2	58	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.1E-13	4	56	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-6	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	5.9E-8	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	9.57E-18	6	56	No hit	No description
SuperFamily	SSF46785	1.52E-17	114	194	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.2E-16	115	186	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	2.7E-16	115	180	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	24.993	117	185	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	3.4E-9	122	178	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MGAPKQKWTA EEEAALKAGV IKHGAGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNISVMV 60 NGYGSREKPK LAPKMVHHVL RQDENPMAVG QTDEDISDAK PLAVSRGALL VANPKRTTVR 120 LDNLIMEAIT SLKEPGGSHK TAIASYIEEQ YWPPNDFKRI LSAKLKYLAA NGKLIKVKRK 180 YRIAPTSVFA ERRRVSPLPL EGRQRISPKI ERDGFNMLTM SQIDLDLGRM RTMTAEQAAE 240 VAARAVAEAE AAIAVAEEAT REAETAEADA EAAQAFAETA RKTLKGRTTP KMVDFITASF 300 LNDLF

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU277754	1e-108	GU277754.1 Populus balsamifera isolate FBK13 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277755	1e-108	GU277755.1 Populus balsamifera isolate FBK13 haplotype B putative DNA-binding protein gene, partial sequence.
GenBank	GU277756	1e-108	GU277756.1 Populus balsamifera isolate FRE01 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277757	1e-108	GU277757.1 Populus balsamifera isolate FRE01 haplotype B putative DNA-binding protein gene, partial sequence.
GenBank	GU277758	1e-108	GU277758.1 Populus balsamifera isolate GAL12 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277759	1e-108	GU277759.1 Populus balsamifera isolate GAL12 haplotype B putative DNA-binding protein gene, partial sequence.
GenBank	GU277760	1e-108	GU277760.1 Populus balsamifera isolate HAY07 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277761	1e-108	GU277761.1 Populus balsamifera isolate HAY07 haplotype B putative DNA-binding protein gene, partial sequence.
GenBank	GU277762	1e-108	GU277762.1 Populus balsamifera isolate INU03 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277763	1e-108	GU277763.1 Populus balsamifera isolate INU03 haplotype B putative DNA-binding protein gene, partial sequence.
GenBank	GU277764	1e-108	GU277764.1 Populus balsamifera isolate KUU07 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277765	1e-108	GU277765.1 Populus balsamifera isolate KUU07 haplotype B putative DNA-binding protein gene, partial sequence.
GenBank	GU277766	1e-108	GU277766.1 Populus balsamifera isolate MGR10 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277767	1e-108	GU277767.1 Populus balsamifera isolate MGR10 haplotype B putative DNA-binding protein gene, partial sequence.
GenBank	GU277768	1e-108	GU277768.1 Populus balsamifera isolate NWL07 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277769	1e-108	GU277769.1 Populus balsamifera isolate NWL07 haplotype B putative DNA-binding protein gene, partial sequence.
GenBank	GU277770	1e-108	GU277770.1 Populus balsamifera isolate STO11 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277771	1e-108	GU277771.1 Populus balsamifera isolate STO11 haplotype B putative DNA-binding protein gene, partial sequence.
GenBank	GU277772	1e-108	GU277772.1 Populus balsamifera isolate WHR03 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277773	1e-108	GU277773.1 Populus balsamifera isolate WHR03 haplotype B putative DNA-binding protein gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011030320.1	0.0	PREDICTED: telomere repeat-binding factor 1 isoform X1
Refseq	XP_011030321.1	0.0	PREDICTED: telomere repeat-binding factor 1 isoform X1
Refseq	XP_011030322.1	0.0	PREDICTED: telomere repeat-binding factor 1 isoform X1
Swissprot	Q8VWK4	4e-91	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A2K2C5M0	0.0	A0A2K2C5M0_POPTR; Uncharacterized protein
STRING	POPTR_0001s30000.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1453	33	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	3e-91	telomere repeat binding factor 1

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]