PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019770.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 257aa    MW: 27802 Da    PI: 5.7176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019770.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.94.9e-051591961355
                  HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R+++ ++++ L+el+ +      +K + a++L +A+ YI+ Lq
  CCG019770.1 159 REKLGDRIAALQELVSPF-----GKTDTASVLHEAMGYIRFLQ 196
                  89999***********98.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.07E-5141200No hitNo description
Gene3DG3DSA:4.10.280.102.3E-8143202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-12144207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.22146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-6152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAGRESFFEG NHLVPEGNPP SFSELLFSTE DDFVGVDVAH AFHFSSVEKS PTMLCFGGYN  60
YRNDSEIVMF SEETKTTPQP QISGVTCSDS SSASSCSNNC NSVNVISTIS TSNRKRNGSS  120
QEVPMKCTNT VAKTPFLSQR NSKRTETKNP GSANAKVKRE KLGDRIAALQ ELVSPFGKTD  180
TASVLHEAMG YIRFLQDQVK VLCTPYLQSL PEGGENGGEE SIKNLRSRGL CLVSVDCTLP  240
VANSNGADFW SPATMGN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090381e-164AC209038.1 Populus trichocarpa clone POP007-J20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030389.10.0PREDICTED: transcription factor bHLH113 isoform X2
TrEMBLA0A2K2C5X31e-162A0A2K2C5X3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s30670.11e-138(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103212129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.14e-45bHLH family protein