PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019780.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 244aa    MW: 26512.1 Da    PI: 9.1112
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019780.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.66.8e-19752147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd ll+++v ++G+++W+ Iar ++ gR++k+c++rw + 
      CCG019780.1  7 KGPWSPEEDALLKHLVIKHGPRSWTMIARAVP-GRSGKSCRLRWCNQ 52
                     79******************************.***********985 PP
2Myb_DNA-binding49.97.6e-1661102346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T eEd ++++a+ ++G++ W++Iar +  gRt++ +k++w++
      CCG019780.1  61 AFTREEDVIIINAHIKYGNK-WAAIARLLD-GRTDNAIKNHWNS 102
                      79******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.162257IPR017930Myb domain
SuperFamilySSF466892.15E-304100IPR009057Homeodomain-like
SMARTSM007174.2E-16655IPR001005SANT/Myb domain
PfamPF002491.1E-17752IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-24860IPR009057Homeodomain-like
CDDcd001677.02E-16951No hitNo description
SMARTSM007171.3E-1358106IPR001005SANT/Myb domain
PROSITE profilePS5129419.48759108IPR017930Myb domain
PfamPF002492.7E-1361102IPR001005SANT/Myb domain
CDDcd001677.78E-1261104No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2061107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDSNRVKGPW SPEEDALLKH LVIKHGPRSW TMIARAVPGR SGKSCRLRWC NQLSPVVEHR  60
AFTREEDVII INAHIKYGNK WAAIARLLDG RTDNAIKNHW NSKLKRKYAD FVVHGGMVNE  120
DGVKDKSAKT VSSSSVLERA NTPSGSEVSD AGLPGTSSLL VQENVPVVES GISNKADVST  180
ELTLSVPGMK SGQLGRDHGE GNNGLLTGDA EKTMTFGPEL FAVMQEMISK EVRDYMVGMG  240
GKSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-3661073104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-3661073104C-Myb DNA-Binding Domain
1msf_C2e-3661073104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030396.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231609e-63MYB73_ARATH; Transcription factor MYB73
TrEMBLB9GHS71e-172B9GHS7_POPTR; Uncharacterized protein
STRINGPOPTR_0001s30750.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.14e-65myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]