PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019862.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 258aa    MW: 29235.4 Da    PI: 8.3489
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019862.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-16956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll ++v+++G g+W  I+ + g++R++k+c+ rw++yl
      CCG019862.1  9 KGAWTEEEDILLRKCVEKYGEGRWCQIPLKAGLNRCRKSCRMRWLNYL 56
                     79********************************************97 PP
2Myb_DNA-binding38.62.5e-1262106147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g ++  E +l ++++k+lG+  W++Ia +++ gRt++++k++w++ 
      CCG019862.1  62 KGQFSVGEVDLMIRLHKLLGNS-WSLIAGRFP-GRTANDVKNYWNTN 106
                      57788889999*********99.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.745460IPR017930Myb domain
SuperFamilySSF466899.17E-296103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-22659IPR009057Homeodomain-like
SMARTSM007179.4E-16858IPR001005SANT/Myb domain
PfamPF002493.0E-15956IPR001005SANT/Myb domain
CDDcd001676.77E-121156No hitNo description
Gene3DG3DSA:1.10.10.603.3E-2160111IPR009057Homeodomain-like
PROSITE profilePS5129417.66961111IPR017930Myb domain
SMARTSM007172.7E-1161109IPR001005SANT/Myb domain
PfamPF002494.8E-1162107IPR001005SANT/Myb domain
CDDcd001671.48E-765107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVSSFGVRKG AWTEEEDILL RKCVEKYGEG RWCQIPLKAG LNRCRKSCRM RWLNYLKPNV  60
KKGQFSVGEV DLMIRLHKLL GNSWSLIAGR FPGRTANDVK NYWNTNLRKK VVSGTREAQT  120
KPEPKAITKA NIIRPRPHKF KSSCWLGGKA IPFFNGGFQY GYDLCKPCTP SALSPSNSIE  180
VESMWWESLL DDKEINASNN TRCLGSGSEA DHEHIESLFV EDNAPEGILI ADVFCCEQGQ  240
HCWSDLSFDA DLWNLVNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2391114105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-22911158159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-22911158159MYB PROTO-ONCOGENE PROTEIN
1h8a_C6e-23911127128MYB TRANSFORMING PROTEIN
1mse_C4e-2391114105C-Myb DNA-Binding Domain
1msf_C4e-2391114105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006495.10.0PREDICTED: transcription factor MYB113-like
SwissprotQ9FNV92e-60MY113_ARATH; Transcription factor MYB113
TrEMBLA0A3N7G5361e-175A0A3N7G536_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14460.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.17e-63myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]