PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019944.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 119aa MW: 13861.7 Da PI: 7.5619

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019944.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.1	5.7e-12	4	90	1	88
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt d+ + r+++p +++e+ gg+ +s++l ++d+ g+ +++ +k+ g+ l+ GW++Fv + gL++gD+vv+++++++ CCG019944.1 4 FSKALT--DTDVRFRFSFPTHCLEHLdfGGN--NSVDLHVKDSCGELRVIRC--WKRNGGydkPELRMGWRDFVADYGLRVGDMVVLHREDDH 90 667774..44455678*999966698766..799*****9999999..5555554557899*******************76654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	7.26E-13	3	91	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.98E-14	3	102	No hit	No description
Gene3D	G3DSA:2.40.330.10	7.8E-14	3	92	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	5.3E-9	5	91	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MQIFSKALTD TDVRFRFSFP THCLEHLDFG GNNSVDLHVK DSCGELRVIR CWKRNGGYDK 60 PELRMGWRDF VADYGLRVGD MVVLHREDDH NLGSQFRIEA KRSIKLFGKE DWGEVTRAN

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC210344	1e-157	AC210344.1 Populus trichocarpa clone POP100-P10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006385207.1	8e-76	uncharacterized protein LOC18096617
Refseq	XP_024452702.1	8e-76	uncharacterized protein LOC112326845
TrEMBL	U5GLC8	2e-74	U5GLC8_POPTR; Uncharacterized protein
STRING	POPTR_0003s01170.1	3e-75	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12594	4	14