PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019976.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 105aa MW: 12029.2 Da PI: 5.7666

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019976.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	44.6	2.3e-14	16	100	175	261
GRAS 175 pfefnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261 +f+ + + a++ + ++L++k+ +Ea++V++ ++lh+l + +++le+ vL+ +k+l+ +++v+veqea++ns++ l+r+++++ CCG019976.1 16 DFKLDHVFANTAGIV-ESTLNLKRtieKEAIVVKWEFELHKLISMPGALEK----VLSKLKELRLEIMVIVEQEANYNSPEILDRLAQSF 100 577777555555544.67788887778**************88888888....*****************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	9.769	1	105	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.1E-12	16	100	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MDRVLAIEAK TLRPTDFKLD HVFANTAGIV ESTLNLKRTI EKEAIVVKWE FELHKLISMP 60 GALEKVLSKL KELRLEIMVI VEQEANYNSP EILDRLAQSF PINIL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011007376.1	2e-52	PREDICTED: uncharacterized protein LOC105113071
TrEMBL	A0A2K1ZTT2	9e-50	A0A2K1ZTT2_POPTR; Uncharacterized protein
STRING	POPTR_0007s01550.1	6e-50	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17902	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	2e-16	GRAS family protein