PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020009.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 340aa    MW: 37742.6 Da    PI: 6.8832
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020009.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.61.6e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv++++++G g+W++ ++  g++R++k+c++rw +yl
      CCG020009.1 14 KGPWTPEEDQKLVKYIQKHGHGSWRALPKLSGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding54.92e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ +++++  lG++ W++Ia++++ gRt++++k++w+++l
      CCG020009.1  67 RGKFSQEEEQTILNLHSVLGNK-WSAIASHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-26564IPR009057Homeodomain-like
PROSITE profilePS5129419.138961IPR017930Myb domain
SuperFamilySSF466891.35E-3211108IPR009057Homeodomain-like
SMARTSM007172.9E-161363IPR001005SANT/Myb domain
PfamPF002497.9E-181461IPR001005SANT/Myb domain
CDDcd001675.05E-131661No hitNo description
PROSITE profilePS5129426.62762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-2865117IPR009057Homeodomain-like
SMARTSM007179.8E-1766114IPR001005SANT/Myb domain
PfamPF002493.2E-1667112IPR001005SANT/Myb domain
CDDcd001671.52E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGRSPCCDES GLKKGPWTPE EDQKLVKYIQ KHGHGSWRAL PKLSGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQTILN LHSVLGNKWS AIASHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHRPRT DIFSSLPHLI ALANLKELID HHSLEEHALR LQTETAQMAK LQYLQYLLQP  180
QPPAASNTAT SSNNLNNIGT LSDIEAFNLL NSLASLKDSP VSSLSQLDLP ASSLQGINDS  240
IHFSHLPDLQ IPCNYQTPPT KGMAQAPELT VFSQGENSPI SPFQFPSSST PFPPSAVPPV  300
TQISSMVNNL GDASSTSSYG EEVPSVWHDL LEDPLFHDIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00503DAPTransfer from AT5G10280Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022802.10.0PREDICTED: myb-related protein 308-like
SwissprotQ9SBF31e-108MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A2K1ZRS40.0A0A2K1ZRS4_POPTR; Uncharacterized protein
STRINGPOPTR_0007s05360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.12e-99myb domain protein 93
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]