PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020186.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 152aa    MW: 17373 Da    PI: 10.2657
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020186.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.91.1e-221057249
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 +i n+sn  vtfskRr g++KKA+E+S+LC+aeva+i+fs+  k++ +
  CCG020186.1 10 KIANESNLMVTFSKRRSGLFKKASEISTLCGAEVALIVFSPGKKVFSF 57
                 589**************************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.698161IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-28174IPR002100Transcription factor, MADS-box
CDDcd002653.73E-33269No hitNo description
PRINTSPR004042.9E-19323IPR002100Transcription factor, MADS-box
PfamPF003196.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MGRQKLEMVK IANESNLMVT FSKRRSGLFK KASEISTLCG AEVALIVFSP GKKVFSFGHP  60
SVEKVVERYV SGNIHQTSGA FHLIEAHRNA RIRELNMKLT QDAQNQLEME KKRGEELDKL  120
RKASKSQNWW QSPIQELDLA QLEQLKESFL TL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-18186187MEF2C
5f28_B4e-18186187MEF2C
5f28_C4e-18186187MEF2C
5f28_D4e-18186187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023099.11e-108PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL62
SwissprotQ9FKK25e-53AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A2K1ZSV24e-94A0A2K1ZSV2_POPTR; Uncharacterized protein
STRINGPOPTR_0007s03430.16e-93(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-55AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]