PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020196.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 84aa    MW: 9668.35 Da    PI: 10.9705
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020196.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.71.3e-271262151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+i+n+  rqvtfskRr g++KKA+ELS+LCdae+a+ +fs tgkl+eys+
  CCG020196.1 12 KKIDNTAARQVTFSKRRRGLFKKAYELSTLCDAEIALTVFSATGKLFEYSN 62
                 68***********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.35E-27464IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.1464IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-37463IPR002100Transcription factor, MADS-box
PROSITE patternPS003500660IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-27626IPR002100Transcription factor, MADS-box
CDDcd002651.04E-32664No hitNo description
PfamPF003191.6E-251360IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-272641IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-274162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MVKMTRKKIQ IKKIDNTAAR QVTFSKRRRG LFKKAYELST LCDAEIALTV FSATGKLFEY  60
SNTSKIIFLE GKGKGERSLG RNWY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-20464161MEF2C
5f28_B2e-20464161MEF2C
5f28_C2e-20464161MEF2C
5f28_D2e-20464161MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2292263e-58CU229226.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461638.12e-38MADS-box protein JOINTLESS
SwissprotQ9FUY65e-28JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A2K1ZSW94e-37A0A2K1ZSW9_POPTR; Uncharacterized protein
STRINGPOPTR_0007s03270.16e-40(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-29MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]