PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020210.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 386aa    MW: 42387.4 Da    PI: 4.1737
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020210.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA436.1e-14220256135
         GATA   1 CsnCg..ttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg  +++Tp +Rrgp g++tLCnaCGl+++ kg+
  CCG020210.2 220 CQHCGicAKDTPAMRRGPAGPRTLCNACGLMWANKGT 256
                  *****55566************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.783118IPR010399Tify domain
SMARTSM009797.4E-983118IPR010399Tify domain
PfamPF062008.7E-1186117IPR010399Tify domain
PROSITE profilePS5101713.037151193IPR010402CCT domain
PfamPF062031.5E-15151192IPR010402CCT domain
SMARTSM004014.4E-9214267IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.3E-13219261IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.62E-14219263No hitNo description
SuperFamilySSF577165.7E-11219270No hitNo description
PROSITE patternPS003440220247IPR000679Zinc finger, GATA-type
PfamPF003201.2E-11220256IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.315223270IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MPNSNGQAAA AVPVQMNHIE AQLLDEEDGD NNNITGGGEE SIDNTNSIQF EDGGCSGVVG  60
EAVAASDMYG STNGGGGADY GLVTANNDQL TLSFQGEVYV FDAVAPDKVQ AVLFLLGEPE  120
SSTIVPSSEF LLQQNARSAG DASQGLKFSR RIASLERFRE KRKERCFEKK VRYTCRKEVA  180
QRMHRRRGQF ASLNNCYGTD NGIWEPSNGM RNPEFDLLRC QHCGICAKDT PAMRRGPAGP  240
RTLCNACGLM WANKGTLRDL NKGGRQISFN QNELVTPDFK PSTMERENPF ANPDEAESQE  300
ESKPVPLDSE NSLRPNEQDL LETDENAPDP LPMHVENSSM KLDDEDFENT LDELGDVSGS  360
EFEIPEHFDD QVDIEDSSTG TEWPGT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166013e-59AC216601.1 Populus trichocarpa clone POP091-G07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023066.10.0PREDICTED: GATA transcription factor 24-like isoform X1
SwissprotQ8GXL74e-60GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2K1ZSZ90.0A0A2K1ZSZ9_POPTR; Uncharacterized protein
STRINGPOPTR_0007s03120.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-54ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]