PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020314.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 490aa    MW: 53750.7 Da    PI: 9.3471
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020314.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.21.4e-32211267360
                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  CCG020314.1 211 DGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSF-DGQIAEIVYKGEHNHSK 267
                  9***************************************.***************85 PP
2WRKY103.61.1e-32409466259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   Dg++WrKYGqK vkg+++prsYYrCts +C+v+k+ver ++dp+++++tYeg+Hnhe
  CCG020314.1 409 GDGFRWRKYGQKIVKGNPYPRSYYRCTSIKCNVRKHVERVSDDPRAFITTYEGKHNHE 466
                  5********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-29200268IPR003657WRKY domain
SuperFamilySSF1182901.44E-25208268IPR003657WRKY domain
SMARTSM007741.8E-36209267IPR003657WRKY domain
PfamPF031063.9E-25211265IPR003657WRKY domain
PROSITE profilePS5081123.617211268IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-34393468IPR003657WRKY domain
SuperFamilySSF1182901.7E-28402468IPR003657WRKY domain
PROSITE profilePS5081134.853403468IPR003657WRKY domain
SMARTSM007741.6E-37408467IPR003657WRKY domain
PfamPF031061.2E-25410466IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MIQPELLADI RYLLKMEIKE SERVVVAKPV ASRPSYSNFT SFSELLAGAI NTTPSNVCSG  60
TAVAAIRPKT VRFRPVVNRA PGALVSSQAE LSGTAVSNSF NKVSGTDSKA TIIYKPQAKL  120
VSKATVSLLA NMGNFNPNSQ QMLQPVETRP PLSKQDKHNF SSQLTSNLHQ NIPSHAEADH  180
ATEPLRLTSL NQEEDPKTLS NASNGDRPSY DGYNWRKYGQ KQVKGSEYPR SYYKCTYPNC  240
PVKKKVERSF DGQIAEIVYK GEHNHSKPQP PKRNSSVTQG LSDGNASDRN STPLWSNQLN  300
ERNEGSEGRE ENQNEIGLPV HSIYQGKAPP SYDPAGTGTI NAGTGTPDNS GGVSGECDGG  360
SKGLEGATDE PKSKRRKTEI QSTEGGMSGE GVQEPRVVVQ SSTDSEILGD GFRWRKYGQK  420
IVKGNPYPRS YYRCTSIKCN VRKHVERVSD DPRAFITTYE GKHNHEMPLK ITNLAAFEPD  480
SQAPTTRDKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-31211468877Probable WRKY transcription factor 4
2lex_A1e-31211468877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1796080.0EF179608.1 (Populus tomentosa x P. bolleana) x P. tomentosa clone 01 WRKY transcription factor pseudogene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005037.10.0PREDICTED: WRKY transcription factor 44-like
RefseqXP_011005038.10.0PREDICTED: WRKY transcription factor 44-like
RefseqXP_011005039.10.0PREDICTED: WRKY transcription factor 44-like
RefseqXP_011005040.10.0PREDICTED: WRKY transcription factor 44-like
TrEMBLU5GAH70.0U5GAH7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s13550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-113WRKY family protein