PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG020343.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 501aa MW: 53072.7 Da PI: 9.0664

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG020343.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H CCG020343.1 71 FVCEICNKGFQRDQNLQLHRRGH 93 89*******************88 PP
2	zf-C2H2	14	0.00015	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ CCG020343.1 147 WKCERCSKKYAVQSDWKAHLKTC 169 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.8E-5	70	93	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	8.0E-5	71	93	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	71	93	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	71	93	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	5.77E-7	71	93	No hit	No description
PROSITE pattern	PS00028	0	73	93	IPR007087	Zinc finger, C2H2
SMART	SM00355	120	112	142	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.3E-5	135	168	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.77E-7	142	167	No hit	No description
SMART	SM00355	130	147	167	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MVGGENLSRT TVSKASGEDT ISNVSSSGNQ GMPHSITVPP PKKKRNLPGM PDPDAEVVAL 60 SPKTLVATIR FVCEICNKGF QRDQNLQLHR RGHNFPWKLK QRTNKEPRKR VYVCPESSCV 120 HHNPARALGD LTGIKKHFFR KHGEKKWKCE RCSKKYAVQS DWKAHLKTCG TKEYKCDCGT 180 LFSRRDSFVT HRAFCDALAE ESARAQTLAI MGKEGNGCDI KRVVASPPPP PLTPSTSVVS 240 PGLSVQSSEL AENPIGHSPP PTACASATST SSTSSASNVF ATTFASSTAT PAAMPQHASV 300 PSSFPNLFCG LARSDCPATM PTPRAIEPPS LSLSPSFYLS NNTSSLFSTE QDHYHYTPSP 360 QPAMSATALL QKAAQMGATT SNPSFLRGLG LPRSTNQDSN FNTWDVKPES TTTVAAGLGL 420 GLPSSDVMMG SSSLFGNKPT TLDLLGLGMD AASSALLNSY SGGFNVGAAP AAAYGGGGGR 480 GTSEETWDGV PERKPYGSTG A

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MVGGENLSRT TVSKASGEDT ISNVSSSGNQ GMPHSITVPP PKKKRNLPGM PDPDAEVVAL  60
SPKTLVATIR FVCEICNKGF QRDQNLQLHR RGHNFPWKLK QRTNKEPRKR VYVCPESSCV  120
HHNPARALGD LTGIKKHFFR KHGEKKWKCE RCSKKYAVQS DWKAHLKTCG TKEYKCDCGT  180
LFSRRDSFVT HRAFCDALAE ESARAQTLAI MGKEGNGCDI KRVVASPPPP PLTPSTSVVS  240
PGLSVQSSEL AENPIGHSPP PTACASATST SSTSSASNVF ATTFASSTAT PAAMPQHASV  300
PSSFPNLFCG LARSDCPATM PTPRAIEPPS LSLSPSFYLS NNTSSLFSTE QDHYHYTPSP  360
QPAMSATALL QKAAQMGATT SNPSFLRGLG LPRSTNQDSN FNTWDVKPES TTTVAAGLGL  420
GLPSSDVMMG SSSLFGNKPT TLDLLGLGMD AASSALLNSY SGGFNVGAAP AAAYGGGGGR  480
GTSEETWDGV PERKPYGSTG A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-36	143	209	3	69	Zinc finger protein JACKDAW
5b3h_F	8e-36	143	209	3	69	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011006759.1	0.0	PREDICTED: zinc finger protein NUTCRACKER-like
Swissprot	Q9LVQ7	1e-139	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	U5GU12	0.0	U5GU12_POPTR; Uncharacterized protein
STRING	POPTR_0002s26430.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-112	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]