PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG020409.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 164aa MW: 18031.7 Da PI: 7.4233

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG020409.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.6	4.3e-43	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+CakdCv+apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+ssl+ eA+ar+rdPvyG+vg i+ lq+q++ql+ +la+++ CCG020409.1 6 PCASCKLLRRRCAKDCVFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLMNEAKARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQ 103 7***********************************************************************************************99 PP DUF260 99 ee 100 +e CCG020409.1 104 AE 105 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.134	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.5E-43	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MGGNSPCASC KLLRRRCAKD CVFAPYFPSD DPHKFAIVHK VFGASNVSKM LQELPVHQRA 60 DAVSSLMNEA KARVRDPVYG CVGAISYLQN QVSQLQMQLA VAQAEILCIQ MQPEPVMPTS 120 QMGPDDDKSF LLQNSLSQHL NYGSSSNAIH DSLKRESIFG DMIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-48	2	107	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-48	2	107	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011035872.1	1e-119	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	2e-73	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	B9HSJ7	1e-112	B9HSJ7_POPTR; Uncharacterized protein
STRING	POPTR_0010s19180.1	1e-113	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	9e-76	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]