PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020445.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-X1
Protein Properties Length: 883aa    MW: 98775.1 Da    PI: 8.3428
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020445.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.12.5e-05197215120
     zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                  CG H C  lCH+GpCp+Cp+
  CCG020445.2 197 CG-HFCLLLCHPGPCPSCPK 215
                  **.***************96 PP
2zf-NF-X1262e-08249266118
     zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                  CG+H+C+k+CH GpCppC
  CCG020445.2 249 CGIHSCKKICHDGPCPPC 266
                  ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.88E-582165No hitNo description
PROSITE profilePS500898.84585152IPR001841Zinc finger, RING-type
PROSITE patternPS01359085151IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.60E-6185234No hitNo description
PfamPF014220.0029197214IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0049197215IPR000967Zinc finger, NF-X1-type
CDDcd060086.25E-8239279No hitNo description
PfamPF014223.5E-6249266IPR000967Zinc finger, NF-X1-type
SMARTSM004381.7E-5249268IPR000967Zinc finger, NF-X1-type
CDDcd060081.82E-7294335No hitNo description
PfamPF014220.082302320IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0013302321IPR000967Zinc finger, NF-X1-type
CDDcd060088.02E-9346395No hitNo description
PfamPF014220.026356375IPR000967Zinc finger, NF-X1-type
SMARTSM004380.38356376IPR000967Zinc finger, NF-X1-type
CDDcd060085.17E-8399447No hitNo description
PfamPF014220.0054409426IPR000967Zinc finger, NF-X1-type
SMARTSM004380.15409428IPR000967Zinc finger, NF-X1-type
CDDcd060081.38E-10426474No hitNo description
PfamPF014220.0063430454IPR000967Zinc finger, NF-X1-type
SMARTSM004380.023436455IPR000967Zinc finger, NF-X1-type
SMARTSM0043848493514IPR000967Zinc finger, NF-X1-type
PfamPF014224.8503513IPR000967Zinc finger, NF-X1-type
PfamPF014220.15604614IPR000967Zinc finger, NF-X1-type
SMARTSM0043829604638IPR000967Zinc finger, NF-X1-type
CDDcd060081.83E-4636677No hitNo description
SMARTSM004380.0032648666IPR000967Zinc finger, NF-X1-type
PfamPF014220.024649665IPR000967Zinc finger, NF-X1-type
SMARTSM004382.1711732IPR000967Zinc finger, NF-X1-type
PfamPF0142217712725IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MSSALGYHHH NHLQQQQKPF SDSDSYSDSD SDTTNSQNQH SADLTNSIFK SYFEHTNHQS  60
LQPTQHDLTK IKSFLNSSSS GALSCLICLE RIKTSDPTWS CTSLCYAVFH LICIQSWARQ  120
ASDLSALRAS TRLPISSDKA AESSTWNCPK CRSDYSRSEI PRNYLCFCGK VENPPSDPWI  180
LPHSCGEICN RPLKNNCGHF CLLLCHPGPC PSCPKLVKTT CFCGKTTDVK RCGSKLFSCN  240
NICNKSLDCG IHSCKKICHD GPCPPCNARG VYKCSCGRKV EERECCEREF RCENPCEKLL  300
ACGKHVCERG CHFGECGDCP LQGKRACPCG KRLYEGMACD IVVPLCGGTC DKMLSCGFHK  360
CHERCHRGPC IETCRIVVTK LCRCGGMKKE VPCYQDLACE RKCQRMRDCG RHACKRRCCD  420
GDCPPCGEIC GKRLRCKNHK CPAPCHRGAC SPCPVMFTIS CACGETHFEV PCGTEKDQKP  480
PKCRKSCGIS PLCRHGSDSK PHKCHYGACP PCRLLCDEEY PCSHNCKLRC HGPRPPPNPD  540
FTLRPKKKKP NHQSESTPGT PCPPCPELVW RPCLGQHIGA ERMMVCSNRT QFSCENLCGS  600
PLSCGNHYCT KTCHALKSQS STSLVQHQRS ESCEECHLPC EKERKPACRH SCPLPCHPGD  660
CPPCKVLVKR SCYCGSMVHV FECIYYNNLS EKEQMAARSC GGSCHRKLPN CTHLCPKTCH  720
PGQCPSPDKC TKKVTVRCQC QTLKKEMPCQ EVQAAYHKAG SDPKDISKSH FGLGLLPCNS  780
GCKSKSQVLD QELHLRKSKD LEEKVPATEI HPPKRRKRRE HLQETKKTSQ LQKIAATMKW  840
LLVTVTLVVT LVAAAYFGYK GLMWLSDWMD EVEEQQRHRR RHP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1812818PKRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT1647280.0KT164728.1 Populus tomentosa clone Potom.008G20580 zinc finger family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035942.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2 isoform X1
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLB9HSN70.0B9HSN7_POPTR; NF-X1 family protein
STRINGPOPTR_0010s19600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors