PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020469.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 344aa    MW: 39560.7 Da    PI: 7.8393
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020469.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.28e-153781798
                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 ++p+kf+e++g  +  s   ++  ++g++W+v +  +k  + +++ +GW+eFv+ + + +g  vvF++ g+s+f   v +f+
  CCG020469.1  3 RIPRKFVEKFG--EGLSDIAKVAVPNGNEWQVGI--TKEHNNIWFDEGWQEFVEHHSIGSGYLVVFRYRGDSNF--SVLIFD 78
                 69********7..4478899**************..********************************999999..888886 PP
2B3681.4e-21246334697
                  ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ++ +++ ++ l++p +fa++h+++ ++   ++l+ ++gr+W +++  +++++r   ++kGW+eF ++n+LkegD++vF+l+++++f l+v +f
  CCG020469.1 246 LRRYNFYNHFLYVPLEFAQRHMSDAPRC--IKLQVSDGREWPIQI--NRNQCRyLSISKGWNEFSQENNLKEGDVCVFELINKEKFVLKVAIF 334
                  47899999*************8886664..9999999********..99999956799***********************99***9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.6E-5180IPR003340B3 DNA binding domain
PROSITE profilePS5086313.789180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-19282IPR015300DNA-binding pseudobarrel domain
CDDcd100172.29E-14378No hitNo description
SuperFamilySSF1019362.75E-17382IPR015300DNA-binding pseudobarrel domain
PfamPF023624.3E-12378IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-24234335IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-22235334IPR015300DNA-binding pseudobarrel domain
CDDcd100174.19E-20240334No hitNo description
PROSITE profilePS5086314.833241337IPR003340B3 DNA binding domain
SMARTSM010191.6E-17242337IPR003340B3 DNA binding domain
PfamPF023624.1E-20245334IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MQRIPRKFVE KFGEGLSDIA KVAVPNGNEW QVGITKEHNN IWFDEGWQEF VEHHSIGSGY  60
LVVFRYRGDS NFSVLIFDMT ACEIQYRRMR PTGGEGMNDA EKCSFYDEDE MKDEGSVESL  120
DTHYCRALKS RVFNLNAREG GSSKGHGPSS ETAVKKEYLE MTDIDNTSES RRGTSLKKHR  180
MSGPHGETKA KKSKSKSKLG ENELLPECEA IEFAPRGFAK ASEKSKRAIH AARMFKPKSP  240
SFMVILRRYN FYNHFLYVPL EFAQRHMSDA PRCIKLQVSD GREWPIQINR NQCRYLSISK  300
GWNEFSQENN LKEGDVCVFE LINKEKFVLK VAIFHELEDS VPLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-2222133528141B3 domain-containing transcription factor VRN1
4i1k_B2e-2222133528141B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035988.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
RefseqXP_011035989.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2K1YWN80.0A0A2K1YWN8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s19890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1642569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-50B3 family protein