PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG020638.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 545aa MW: 59001.2 Da PI: 9.3269

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG020638.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	93	113	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H CCG020638.1 93 CEICNKGFQRDQNLQLHRRGH 113 *******************88 PP
2	zf-C2H2	13.1	0.00029	167	189	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ CCG020638.1 167 WKCVKCSKRYAVQSDWKAHAKTC 189 58******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.29E-6	90	113	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.6E-5	90	113	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.11	91	113	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.824	91	113	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	93	113	IPR007087	Zinc finger, C2H2
SMART	SM00355	140	132	162	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.2E-4	155	188	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.29E-6	162	187	No hit	No description
SMART	SM00355	250	167	187	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MMKSLMFHQQ QQQILQEENM SNLTSASGDQ ASVSSGNRNE TGTNYGVQQY FASPAQTQPP 60 VKKKRNLPGN PDPDAEVIAL SPKTLMATNR FLCEICNKGF QRDQNLQLHR RGHNLPWKLK 120 QRTSKEVRKK VYVCPEPNCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCV KCSKRYAVQS 180 DWKAHAKTCG TREYRCDCGT LFSRRDSFIT HRAFCEALAE ESARAITGAP GHFPSTQPGS 240 STPRINLQVP QFSGQALHAF SLKKEQQSSF RSRPDFPSWL ACPPGLGVSG PPHQQTPIDL 300 LSSSSSPSIL STRLGQEFTP THQDMSPNPN PSLGPTLLQY PSGPSPHMSA TALLQKAAQM 360 GATVSSKTTG LMRPHHHQQQ QEQAHVSANA DNVSNTNTAV FGLDLSSREE LASGGLFFSG 420 LAPFGNKAGP TVPSGASNTG APPSGALIED MMCSLSSASG FEGTSLEDAL VSGVLNSKKD 480 VNFSYSLSKT TRNGNGGGSS GGNEGLTRDF LGLRPLSHSD ILSMAGLSNC VNTSHEQQIH 540 KPWQG

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MMKSLMFHQQ QQQILQEENM SNLTSASGDQ ASVSSGNRNE TGTNYGVQQY FASPAQTQPP  60
VKKKRNLPGN PDPDAEVIAL SPKTLMATNR FLCEICNKGF QRDQNLQLHR RGHNLPWKLK  120
QRTSKEVRKK VYVCPEPNCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCV KCSKRYAVQS  180
DWKAHAKTCG TREYRCDCGT LFSRRDSFIT HRAFCEALAE ESARAITGAP GHFPSTQPGS  240
STPRINLQVP QFSGQALHAF SLKKEQQSSF RSRPDFPSWL ACPPGLGVSG PPHQQTPIDL  300
LSSSSSPSIL STRLGQEFTP THQDMSPNPN PSLGPTLLQY PSGPSPHMSA TALLQKAAQM  360
GATVSSKTTG LMRPHHHQQQ QEQAHVSANA DNVSNTNTAV FGLDLSSREE LASGGLFFSG  420
LAPFGNKAGP TVPSGASNTG APPSGALIED MMCSLSSASG FEGTSLEDAL VSGVLNSKKD  480
VNFSYSLSKT TRNGNGGGSS GGNEGLTRDF LGLRPLSHSD ILSMAGLSNC VNTSHEQQIH  540
KPWQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-33	163	224	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-33	163	224	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	129	KLKQRTSKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC212927	0.0	AC212927.1 Populus trichocarpa clone POP017-N15, complete sequence.
GenBank	AC216467	0.0	AC216467.1 Populus trichocarpa clone POP034-D10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000809.1	0.0	PREDICTED: zinc finger protein NUTCRACKER
Refseq	XP_011000810.1	0.0	PREDICTED: zinc finger protein NUTCRACKER
Swissprot	Q8H1F5	1e-125	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2K2B130	0.0	A0A2K2B130_POPTR; Uncharacterized protein
STRING	POPTR_0003s04470.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-126	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]