PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020751.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 514aa    MW: 56550.8 Da    PI: 5.7854
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020751.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.69.1e-071251437
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                   C+ ++e+ + l+C+ ++  lC  C ++ H+       H
  CCG020751.1 12 VPCDFCSEQAAVLYCRADSAKLCLFCDQHVHSAnllsrkH 51
                 57***************************99555555556 PP
2zf-B_box24.55.5e-085497340
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                  ++C++++++++++ C +++  lC++C    H +      H+++
  CCG020751.1 54 SQICDNCSSEPVSFRCSTDNLVLCQECDWDAHGScsvsasHDRT 97
                 689************************99999447777777765 PP
3CCT64.14.1e-22466509144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R  a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk +
  CCG020751.1 466 RGDAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKTT 509
                  6789*************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.6E-12956IPR000315B-box-type zinc finger
PROSITE profilePS501199.94956IPR000315B-box-type zinc finger
CDDcd000212.12E-71256No hitNo description
PROSITE profilePS501199.6415299IPR000315B-box-type zinc finger
PfamPF006432.6E-55495IPR000315B-box-type zinc finger
CDDcd000211.90E-65685No hitNo description
SMARTSM003361.55799IPR000315B-box-type zinc finger
PfamPF062031.3E-16466508IPR010402CCT domain
PROSITE profilePS5101714.922466508IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MVTHKSKTKE TVPCDFCSEQ AAVLYCRADS AKLCLFCDQH VHSANLLSRK HVRSQICDNC  60
SSEPVSFRCS TDNLVLCQEC DWDAHGSCSV SASHDRTTVE GFSGCPSALD LASIWGFDLE  120
EKKPEPLIEN WSNNSCGAIH DLVNEPWVYD KSSGNLTFQD LMVPNENNNN GNRNIDNVMV  180
FGNVTKSPSC GKYKHVIYKQ LFELFKRDLM GDGVESEGCG FGDGEGCGFG GGDGGGETLV  240
TQSRSGWRSG VKGVQFGNRN DGGFGDDNAI VCGDNGSGGN VRGEQLLQEQ RPFTSLLMLP  300
TEVDVKSNGR VVGGDITWDS NAKAHDTQVW DFHLGQLRNH DESGQLEIEY VANDAGFVIK  360
DFGELMKETS STSPKMLGDM YQMNCTTAHD DMTSFNNNLN NPSSSQGPAT SESNNLPIVR  420
SGFSKPGCSS SSNDVQFMEQ SILIRGEGLK MEAATKVGME LLARNRGDAM QRYKEKKKTR  480
RYDKHIRYES RKARADTRKR VKGRFVKTTE APDS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2977050.0KC297705.1 Populus tomentosa COL gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036146.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15-like isoform X1
TrEMBLU3Q0450.0U3Q045_POPTO; COL
STRINGPOPTR_0001s13310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.21e-100B-box type zinc finger protein with CCT domain