PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020817.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 742aa    MW: 80013.1 Da    PI: 6.368
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020817.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.1e-32322379260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  +++++ei+Y+g H h+k
  CCG020817.1 322 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-EGHITEIIYKGAHSHPK 379
                  7****************************************.***************85 PP
2WRKY103.11.5e-32533591159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+++d k v++tYeg+Hnh+
  CCG020817.1 533 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCTVRKHVERASHDLKSVITTYEGKHNHD 591
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-28319380IPR003657WRKY domain
SuperFamilySSF1182903.66E-25320380IPR003657WRKY domain
SMARTSM007748.8E-36321379IPR003657WRKY domain
PROSITE profilePS5081122.343322380IPR003657WRKY domain
PfamPF031061.2E-24322378IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.1E-37518593IPR003657WRKY domain
SuperFamilySSF1182901.7E-28525593IPR003657WRKY domain
PROSITE profilePS5081138.503528593IPR003657WRKY domain
SMARTSM007741.7E-37533592IPR003657WRKY domain
PfamPF031068.6E-25534591IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MAGIDDNVAI IGDWVPPSPS PRAFFSAMIG DDINSSTITE PHGENRTKGL FLGQPEQMTT  60
GNAEKKDGAR TSGAQLTELG SFSEQKSNSR GGLVERMAAR AGFNAPRLNT ESIRSAETSL  120
NPEIRSPYLT IPPGLSPTTL LDSPVFLSNL AQPSPTTGKF SFFPNGSSKN STVSSKLPDR  180
SKETFFEDIN SSSFAFKPMG ESGSSFFLGG TSKITSATFP QQSFPSIDVS VHSENAHQSH  240
DVAPTKVQSE SRNSLHFPAE FFKLTTEKDN GGNTVADQRT FDTVSGNAEH SSPLDEQQDE  300
EGDQRASGDS MAAGGTGGTP SEDGYNWRKY GQKQVKGSEY PRSYYKCTHP NCPVKKKVER  360
SLEGHITEII YKGAHSHPKP LPNRRSAVGS LDTQLDIPEQ VGPQIGSVND SAWAGTQMGN  420
AAGTSDWRRD NVEVTSSASG GPGPEVGNPS SLVQAQSGTP FESADAIDAS STFSNDEDDD  480
RATHGSVGYD GEGEESESKR RKIETYATEM SGATRAIREP RVVVQTTSEV DILDDGYRWR  540
KYGQKVVKGN PNPRSYYKCT STGCTVRKHV ERASHDLKSV ITTYEGKHNH DVPAARNSSH  600
VNSGTSTATP GQAAVAVQTH VHRHEPSQVH NSMARFERPP AFGSFSLPGR QQLGPSPGFS  660
FGMNQPGLAN LAMAGLGQGQ PKMPVMPIHP YMAQQHPGNE MGFMMPKEEP KVEPVTEPSL  720
NLSNNPTLYQ QIMSRLPLGP QM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36322594878Probable WRKY transcription factor 4
2lex_A1e-36322594878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007028.10.0PREDICTED: probable WRKY transcription factor 2 isoform X1
RefseqXP_011007029.10.0PREDICTED: probable WRKY transcription factor 2 isoform X1
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A1X9IXI90.0A0A1X9IXI9_POPTO; Uncharacterized protein
STRINGPOPTR_0001s47670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]