PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020918.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 309aa    MW: 34430 Da    PI: 6.0484
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020918.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.34.8e-31118174258
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                   Dgy+WrKYGqK++k+s++prsYYrCt ++C +kk+vers+edp++++itYeg H h
  CCG020918.1 118 GDGYKWRKYGQKSIKNSTHPRSYYRCTNRRCGAKKQVERSSEDPDTLVITYEGLHLH 174
                  5******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-28110174IPR003657WRKY domain
PROSITE profilePS5081126.108112177IPR003657WRKY domain
SuperFamilySSF1182902.35E-26113174IPR003657WRKY domain
SMARTSM007746.8E-34117176IPR003657WRKY domain
PfamPF031062.2E-25119174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEGEVNSSSW FSESEEDELV RELLDDVSPF FFLPEEKNQS KAASPTPRNE AAMNQLISQV  60
YSGPTMQDIE NALSMTSRKD QPEPVSQARF SLLQKGLSKI ENNKYTVKLK SCDNVVAGDG  120
YKWRKYGQKS IKNSTHPRSY YRCTNRRCGA KKQVERSSED PDTLVITYEG LHLHFAHPYF  180
LLNQPQHGDP PSKKPKRTIS EDEFQAHETR QPPEQGQECS THVTSPGSLP SSSTADDYMQ  240
ESDLGAVGPR GLLEDVVPFM IRNPSNYNVS SYSSSSSHRS PPASPSSSLS WSPNLSHSCF  300
DVGINTSIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-181191741974Probable WRKY transcription factor 4
2ayd_A2e-181161741371WRKY transcription factor 1
2lex_A2e-181191741974Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1179300.0JN117930.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor (WRKY34) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007149.10.0PREDICTED: probable WRKY transcription factor 49
TrEMBLB9IFV90.0B9IFV9_POPTR; Uncharacterized protein
STRINGPOPTR_0016s10610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.14e-44WRKY DNA-binding protein 49