PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020961.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 253aa    MW: 28926.1 Da    PI: 8.7902
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020961.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-162572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd++l+ +++++G ++W   ++  g+ R++k+c++rw +yl
      CCG020961.1 25 RGAWSPEEDQKLIAYINRHGIRNWIEMPKAAGLLRSGKSCRLRWMNYL 72
                     89******************************99************97 PP
2Myb_DNA-binding48.91.5e-1578121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ eE e ++++++ lG++ W++Ia++++ gRt++++k++w++
      CCG020961.1  78 RGNFSMEEVETILKLHEILGNR-WSAIAAKLP-GRTDNEIKNFWNT 121
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.7692072IPR017930Myb domain
SuperFamilySSF466896.74E-2922119IPR009057Homeodomain-like
SMARTSM007172.2E-122474IPR001005SANT/Myb domain
PfamPF002491.4E-142572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-232679IPR009057Homeodomain-like
CDDcd001679.47E-102772No hitNo description
PROSITE profilePS5129423.13473127IPR017930Myb domain
SMARTSM007171.3E-1477125IPR001005SANT/Myb domain
PfamPF002495.6E-1478121IPR001005SANT/Myb domain
CDDcd001679.37E-1080123No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2580126IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDFTCIKLAR MGKIAHNSQN LPLKRGAWSP EEDQKLIAYI NRHGIRNWIE MPKAAGLLRS  60
GKSCRLRWMN YLRPDIKRGN FSMEEVETIL KLHEILGNRW SAIAAKLPGR TDNEIKNFWN  120
TRLKKNYVKN NINTAAQAPK LQGAQTSTVE FKKWKLSEID GRLPTAPKIL KPEDLEGSPK  180
LPISYFSSSF NLVNDLIINE NQIIEENVGL LESNGEQCLW DPQFSTEGQT SRVEDYGDTS  240
TVEMWVQELL HGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26231255106B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004281.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A2K2ANY41e-171A0A2K2ANY4_POPTR; Uncharacterized protein
STRINGPOPTR_0004s02570.11e-172(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15840411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.15e-55myb domain protein 74