PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021011.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 560aa    MW: 61854.9 Da    PI: 8.0236
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021011.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.84e-11262318155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a +k++g
  CCG021011.1 262 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLASLKYWG 318
                  78*******************433.44555535555.779999*************998 PP
2AP248.32.5e-15361412155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  CCG021011.1 361 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 412
                  78****************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-8262318IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-14262328IPR016177DNA-binding domain
CDDcd000181.48E-17262326No hitNo description
SMARTSM003805.1E-21263332IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-12263327IPR001471AP2/ERF domain
PROSITE profilePS5103217.003263326IPR001471AP2/ERF domain
PRINTSPR003677.5E-6264275IPR001471AP2/ERF domain
PfamPF008474.4E-10361412IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-17361420IPR016177DNA-binding domain
CDDcd000187.81E-24361419No hitNo description
SMARTSM003801.1E-31362426IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-18362419IPR001471AP2/ERF domain
PROSITE profilePS5103218.769362420IPR001471AP2/ERF domain
PRINTSPR003677.5E-6402422IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MSKWSGFSLT PHLRIDEGFG REDQAPGFAV MPLRSDGSLC VFDPFRRPSN GASDWRYENT  60
MDGGSTSEDG PKLEDFLGCY SNSPSNETKA YCQQEDHQSR QNHANRINVD LAPSFNTNGD  120
VKTGENSFTS RSSLIRSYHF NDNPQTSIPS HCLQHCDLSL SHSHSHESGM NHVPFESASS  180
VSGFKSWLRQ TAPFSSSGNS PIEANNSNFL SLLLTTSPSS LNGLATISPL QVVDNRKRPV  240
VKSLAKEPVS HKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCRKEGQ TRKGRQGGYD  300
KEEKAARAYD LASLKYWGPT THINFPLNTY EKELEEMKHM TRQEFVASLR RKSSGFSRGA  360
SVYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGASAVTNFG  420
IGRYDVKRIC SSSELIASDQ AKRSSKDSAP VALEDYNSCA SSTSSQPHLA IASSEASHEL  480
TDVMWSENTG EHQQQQSANN NNNGVTLVAS SSRNPSNAAS PKCSVGLASD FGLGSESYSQ  540
GYFPLQGGKH QVPMFALWND
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175880.0AC217588.1 Populus trichocarpa clone POP047-P10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036427.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 isoform X1
SwissprotQ1PFE11e-136AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLB9GW200.0B9GW20_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-128AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]