PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021062.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 379aa    MW: 41810.2 Da    PI: 4.5371
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021062.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-18120169255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +++G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  CCG021062.1 120 QFRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDSEARRIRG 169
                  69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.525120177IPR001471AP2/ERF domain
SMARTSM003808.0E-36120183IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-21120179IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-32120179IPR001471AP2/ERF domain
CDDcd000181.05E-31120178No hitNo description
PRINTSPR003673.6E-11121132IPR001471AP2/ERF domain
PfamPF008473.2E-11121169IPR001471AP2/ERF domain
PRINTSPR003673.6E-11143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MCGGAIISDF IAPTTTARSS RRLTSGFEWL GLKKPFNNKH LKPVVADPED DFEADFQEFK  60
DESDADEDYD VFADAKPFAF SASASEPAKK RGLPRGSTAV KSAGSSGLAE KSAKRKRKNQ  120
FRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY DSEARRIRGK KAKVNFPDEA  180
PCASAKHPIK ENSQKRLTKA NLSQDFSYLS NSETDYNNMG FVEEKPQVSQ FGIMNSFPAS  240
GDSGVTPLTP DNASMYFNSD KESNSFDCDF GWGEQGPEIL SVLAATPEVD ESVFVDANPK  300
ELESFSENTA PVEEKNGKSL SEELLAFDNQ LMNLQMPDLV GNWEASLDSF LNGDTTQDGT  360
NAVDLWSFED FPSMVGGVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-201191851380Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1462990.0EF146299.1 Populus trichocarpa clone WS0116_P10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036532.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
RefseqXP_011036533.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLA9PDD20.0A9PDD2_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06930.20.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48083252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.33e-63related to AP2 12