PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021275.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 430aa    MW: 48984 Da    PI: 9.0807
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021275.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74e-11850144
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     rg W +eEd ll + v+++ g++Wk+Ia++++ gRt  qc  rw
      CCG021275.1  8 RGGWAKEEDCLLEESVRKFNGRHWKKIAECLP-GRTVSQCFCRW 50
                     789*****************************.*******8888 PP
2Myb_DNA-binding54.23.4e-1760105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g WT+eEd+ + ++v+++G + W+ Ia+ ++ gR +kqc++rw+k+
      CCG021275.1  60 KGTWTKEEDDCIMELVRKHGCRKWSVIANSLP-GRVGKQCRERWFKF 105
                      799*****************************.************97 PP
3Myb_DNA-binding46.49e-15126169146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r +WT+ E+  l  +++ +G++ W++Iar ++ gR+++ +k++w+ 
      CCG021275.1 126 RAPWTEKEEMTLTYYHEIYGNK-WAKIARFLP-GRSDNAIKNYWNC 169
                      569*******************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.438154IPR017930Myb domain
SuperFamilySSF466895.6E-13560IPR009057Homeodomain-like
SMARTSM007171.0E-10756IPR001005SANT/Myb domain
PfamPF002497.0E-9850IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-171059IPR009057Homeodomain-like
CDDcd001679.79E-101154No hitNo description
PROSITE profilePS5129425.30855110IPR017930Myb domain
SuperFamilySSF466891.76E-2558167IPR009057Homeodomain-like
SMARTSM007171.7E-1159108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2060104IPR009057Homeodomain-like
PfamPF002493.4E-1660104IPR001005SANT/Myb domain
CDDcd001677.24E-1262105No hitNo description
Gene3DG3DSA:1.10.10.601.1E-21116175IPR009057Homeodomain-like
PROSITE profilePS5129421.235121175IPR017930Myb domain
SMARTSM007178.9E-16125173IPR001005SANT/Myb domain
PfamPF002491.7E-12126168IPR001005SANT/Myb domain
CDDcd001672.54E-11128171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
GPTRSSRRGG WAKEEDCLLE ESVRKFNGRH WKKIAECLPG RTVSQCFCRW DRVLNPAIVK  60
GTWTKEEDDC IMELVRKHGC RKWSVIANSL PGRVGKQCRE RWFKFSAKLI ISFCRWFNHL  120
NPTINRAPWT EKEEMTLTYY HEIYGNKWAK IARFLPGRSD NAIKNYWNCV LKKNLDSYSL  180
HGCTTDLFTV SSPNSYNCAA ELNCLKLKER QSVEKAAFVY ENMELRCSAE MSASGSGKAN  240
GIGKKNEVRK LHMQAEEKSQ NCLHHESQQL STLVCNLDAG EVPSMDTCVM HPISPFCCST  300
PTKYAQSISV NSTSPESILR NSARTFKNTP SIIRKRALRG AAIAKTSDVT CTPSLKFSCA  360
NDFQIVDSTN SPNEKQGFLR YFQPETSFAI KSLKRHFDYA FDMEKEADLG KCGKYIPLSV  420
PLHQNFLESR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-4981759159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-4981759159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033774.10.0PREDICTED: myb-related protein A-like
RefseqXP_011033775.10.0PREDICTED: myb-related protein A-like
RefseqXP_011033776.10.0PREDICTED: myb-related protein A-like
RefseqXP_011033777.10.0PREDICTED: myb-related protein A-like
RefseqXP_011033778.10.0PREDICTED: myb-related protein A-like
TrEMBLA0A3N7G6W90.0A0A3N7G6W9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s12390.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.12e-67myb domain protein 3r-3