PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG021441.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

M-type_MADS

Protein Properties

Length: 365aa MW: 41737.9 Da PI: 8.6738

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG021441.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50	3.9e-16	9	52	1	44
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 ++i n+ r tf kR++++lKK + SvLC+++++viif++++ CCG021441.1 9 ESIRNEKSRMLTFRKRKTTLLKKVSDFSVLCGVDACVIIFGPNQ 52 689**************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.2E-15	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.329	1	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-9	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-18	4	96	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.55E-19	5	69	No hit	No description
Pfam	PF00319	4.1E-17	11	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-9	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-9	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MVNGRIKIES IRNEKSRMLT FRKRKTTLLK KVSDFSVLCG VDACVIIFGP NQNDQPAATA 60 ETWPSNSDEV RCIINRYKAC DQPRKCYQGS DYFTAKKKKI DAEFAKLHRQ VLKAKYPAWD 120 DRLSSLSSDQ LRVLLGQLDT KLIETADNTL SIFKEYQYVM DNDASWMQAS SHDVEECRKR 180 NGNNNDNMDS TDFLQLVSNW KSFGARLPIP FQPEMSSPMA KLDANSLNQR TYNNGYSTLY 240 SEPKPLNVLP PVHYESKQSA YRNPSQTKTT EDAMMKIMSY QSHNNSFGCQ ASSSNNQHLS 300 CNGPLYVNPA PWTWFNKADS SVRSVASTMQ PMQPYKQFPM TSFPQQSLFS EINEFNGTAE 360 FERRD

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MVNGRIKIES IRNEKSRMLT FRKRKTTLLK KVSDFSVLCG VDACVIIFGP NQNDQPAATA  60
ETWPSNSDEV RCIINRYKAC DQPRKCYQGS DYFTAKKKKI DAEFAKLHRQ VLKAKYPAWD  120
DRLSSLSSDQ LRVLLGQLDT KLIETADNTL SIFKEYQYVM DNDASWMQAS SHDVEECRKR  180
NGNNNDNMDS TDFLQLVSNW KSFGARLPIP FQPEMSSPMA KLDANSLNQR TYNNGYSTLY  240
SEPKPLNVLP PVHYESKQSA YRNPSQTKTT EDAMMKIMSY QSHNNSFGCQ ASSSNNQHLS  300
CNGPLYVNPA PWTWFNKADS SVRSVASTMQ PMQPYKQFPM TSFPQQSLFS EINEFNGTAE  360
FERRD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011007446.1	0.0	PREDICTED: agamous-like MADS-box protein AGL6
TrEMBL	A0A2K2C7C9	0.0	A0A2K2C7C9_POPTR; Uncharacterized protein
STRING	POPTR_0001s33740.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	6e-12	M-type_MADS family protein