PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021532.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 160aa    MW: 17765.7 Da    PI: 8.2512
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021532.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00014163123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C + F ++  L  H++ H
  CCG021532.1 41 FSCNYCQRKFYSSQALGGHQNAH 63
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.82E-63868No hitNo description
PROSITE profilePS5015711.0944168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MDFQPNTSLH LSLPSNQLNL ELVLEPSSSS SRHSPAEPRV FSCNYCQRKF YSSQALGGHQ  60
NAHKLERTLA KKSREMSSSV RAPSESSYSM SGSTYPRDHQ PALAGFEHHG HAGRIVGGVS  120
YGRTEMNYGS RDGIGGSWSM VYRTENVQEE MSQLDLSLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114823e-32AB011482.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2.
GenBankATHZFPB3e-32L39645.1 Arabidopsis thaliana zinc finger protein 2 (ZFP2) mRNA, complete cds.
GenBankBT0246873e-32BT024687.1 Arabidopsis thaliana At5g57520 mRNA, complete cds.
GenBankCP0026883e-32CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007583.11e-116PREDICTED: zinc finger protein 2-like
SwissprotQ392616e-34ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A3N7FA952e-97A0A3N7FA95_POPTR; Uncharacterized protein
STRINGPOPTR_0006s18540.11e-76(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96192334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-26zinc finger protein 2