PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021554.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 234aa    MW: 26682.3 Da    PI: 5.8946
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021554.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.4e-09120160954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P       +K++ a++Le+A++Y+k L
  CCG021554.1 120 ARLRRERISEKIRILQRLVPGG-----RKMDTASMLEEAIRYVKFL 160
                  699*****************96.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.989111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14116179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12116178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-11117165No hitNo description
PfamPF000102.1E-6121160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDINQVKFIN HTWNLDMSME DQILHHDQLP FNSIWPSCPL QTQQTQIPAS SQTPISTFLG  60
DQICNNTEEE EDEPEEELGA MKEMMYRIAA MQPVEIDPAT IRKPKRRNVR ISDDPQSVAA  120
RLRRERISEK IRILQRLVPG GRKMDTASML EEAIRYVKFL KRQIRLLQPN HHQQHQPCTT  180
TGDWQIPYSN KPLDSIITTP SLLEPQAGGL GYSILGGNST GGNPLCFNHE VISD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120125RLRRER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007568.11e-176PREDICTED: transcription factor HEC3-like
TrEMBLA0A2K2ACA91e-122A0A2K2ACA9_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0005s06220.11e-155(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-47bHLH family protein