PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021625.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 234aa    MW: 25964.9 Da    PI: 4.8472
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021625.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-17109159255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp     r   r++lg+f+t  +Aaka++ a+ k++g
  CCG021625.2 109 HYRGVRRRP-WGKFAAEIRDPI----RkgSRVWLGTFDTDVDAAKAYDCAAFKMRG 159
                  7********.**********72....235**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-31108168IPR001471AP2/ERF domain
PROSITE profilePS5103224.368109167IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-22109168IPR016177DNA-binding domain
PfamPF008478.5E-13109159IPR001471AP2/ERF domain
SMARTSM003809.5E-36109173IPR001471AP2/ERF domain
CDDcd000187.50E-30109167No hitNo description
PRINTSPR003673.4E-13110121IPR001471AP2/ERF domain
PRINTSPR003673.4E-13149169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MATPEESSTL ELIRKHLLGD FTSTDEFISN LESSIASVSV KLESSLSGSE PNSPVSDQSY  60
HSTQEAYSFE IKPEIIDLTP PEPVFSGSSN QYPPPEPVKM TDKGETVRHY RGVRRRPWGK  120
FAAEIRDPIR KGSRVWLGTF DTDVDAAKAY DCAAFKMRGR KAILNFPSEA GLSSPPPATG  180
RKRGRSKREE VLPESVDVST ENWNVKWSGE VEEGVSDEEQ LSPLTQETML ARLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-27108167160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165940.0AC216594.1 Populus trichocarpa clone POP017-A13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022363.11e-171PREDICTED: ethylene-responsive transcription factor ERF106-like
TrEMBLB9NBR01e-160B9NBR0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s15060.11e-160(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.14e-50ERF family protein