PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021626.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 288aa    MW: 31708.6 Da    PI: 6.3074
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021626.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-20129179255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka++ a+ +l+g
  CCG021626.1 129 HYRGVRRRP-WGKYAAEIRDP---NkKGARVWLGTFDTAIEAAKAYDSAAFRLRG 179
                  7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-32128188IPR001471AP2/ERF domain
PROSITE profilePS5103224.645129187IPR001471AP2/ERF domain
CDDcd000186.67E-32129187No hitNo description
PfamPF008471.7E-14129179IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22129188IPR016177DNA-binding domain
SMARTSM003803.3E-37129193IPR001471AP2/ERF domain
PRINTSPR003672.2E-13130141IPR001471AP2/ERF domain
PRINTSPR003672.2E-13169189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MASFDEASAL ELIREHLLTD FASMDSLITN LDDLCSTSSS GSTTDYIKTE STEFDPFDQS  60
EQPQPKLQSQ SSIESKPQAS PKSPSTLSQR KPSMIKNIAI PPPATLNMTP QVVQPVVTKA  120
DCSSEQERHY RGVRRRPWGK YAAEIRDPNK KGARVWLGTF DTAIEAAKAY DSAAFRLRGS  180
KAILNFPLEA GKSNSQQPEQ FLETSSKKRK IEEIESSMES TSSVITNKVA KRESSSPETE  240
VKAAATDPLT PSSWKGFWDG EVMGIFNVPP LSPLSPHPSF GYSRLMVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-29128188161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165940.0AC216594.1 Populus trichocarpa clone POP017-A13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022364.10.0PREDICTED: ethylene-responsive transcription factor ERF105-like
TrEMBLB9NBQ90.0B9NBQ9_POPTR; ERF family protein
STRINGPOPTR_0003s15040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.15e-57ERF family protein