PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021679.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 272aa    MW: 30823.6 Da    PI: 9.4366
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021679.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WTt Ed llv++++++G g+W++ +++ g+ R++k+c++rw++yl
      CCG021679.1 14 RGPWTTREDALLVNYIQKHGEGHWRSLPNKAGLLRCGKSCRLRWLNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding54.92.1e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eEd+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
      CCG021679.1  67 RGNITPEEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.016961IPR017930Myb domain
SuperFamilySSF466897.7E-3111108IPR009057Homeodomain-like
SMARTSM007171.7E-121363IPR001005SANT/Myb domain
PfamPF002494.4E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-231568IPR009057Homeodomain-like
CDDcd001674.24E-101661No hitNo description
PROSITE profilePS5129427.2162116IPR017930Myb domain
SMARTSM007171.1E-1666114IPR001005SANT/Myb domain
PfamPF002497.6E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-2769116IPR009057Homeodomain-like
CDDcd001672.09E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWTTR EDALLVNYIQ KHGEGHWRSL PNKAGLLRCG KSCRLRWLNY  60
LRPDIKRGNI TPEEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNS HLSKRLQVRS  120
NKNGSRCMKE SADRKRNVSN LNNKKKQKKD DEDTATRTKI HAPKAIRVSP SSVNIRTNNS  180
MAGSSSHAGG VGDHNDNWFM SDIEVDKNIS GDPAWASNRF LDDLVHDDLS GQNYSPSNID  240
NMLEEMFGEY QQLLNSENHA HLLDSFVDSL LA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
1h8a_C2e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022448.10.0PREDICTED: myb-related protein 308-like
TrEMBLB9GXU70.0B9GXU7_POPTR; Uncharacterized protein
STRINGPOPTR_0003s14430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.18e-65myb domain protein 3