PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021680.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 281aa    MW: 31393.5 Da    PI: 9.0492
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021680.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.7e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WTt Ed ll+++++ +G g+W++ +++ g+ R++k+c++rw +yl
      CCG021680.1 14 RGQWTTREDTLLINYIQAHGEGHWRSLPKKAGLLRCGKSCRLRWVNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding538e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
      CCG021680.1  67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.908961IPR017930Myb domain
SuperFamilySSF466894.77E-2911108IPR009057Homeodomain-like
SMARTSM007176.6E-111363IPR001005SANT/Myb domain
PfamPF002498.3E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-221568IPR009057Homeodomain-like
CDDcd001673.41E-91761No hitNo description
PROSITE profilePS5129426.58162116IPR017930Myb domain
SMARTSM007174.6E-1666114IPR001005SANT/Myb domain
PfamPF002492.7E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2669116IPR009057Homeodomain-like
CDDcd001676.27E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRAPCCSKV GLQRGQWTTR EDTLLINYIQ AHGEGHWRSL PKKAGLLRCG KSCRLRWVNY  60
LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNS HLSKRVKNNT  120
AGNKSKCMGQ PAGKRSGASS NQKRLRNQRE LDSEGICSEN GETATKIKIH LPKAIRVSPS  180
SVAKNVNVNI QSMIGSSSRH AKIGDNANWG ISGLKVVSND GEAWAFINSE EFDGLVYDHD  240
YPCPNSLPND IMLDDIFEEY QQLLKPDDHG HLDSLVDSLI A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022449.10.0PREDICTED: transcription factor MYB3-like
TrEMBLB9GXU60.0B9GXU6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s14420.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-66myb domain protein 111