PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021755.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 346aa    MW: 38515.7 Da    PI: 6.5298
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021755.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-19127178156
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                  ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g+
  CCG021755.1 127 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRGA 178
                  59********.**********72....45*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.55E-30127184No hitNo description
PfamPF008472.5E-12128177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-29128185IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-21128185IPR016177DNA-binding domain
PROSITE profilePS5103223.235128185IPR001471AP2/ERF domain
SMARTSM003803.5E-35128191IPR001471AP2/ERF domain
PRINTSPR003673.8E-10129140IPR001471AP2/ERF domain
PRINTSPR003673.8E-10151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MKMDHPVKFT EHRNQTKLAA PFLSNPVQYP KPPKIVRISV TDTYATDSSS DEENEVSRVS  60
SRKRHATRVK KFVNEITIEP SAPPSRTADC VTSDTGLRAR PSRSARKKVG VNVSQARRLP  120
ATAVVGKKFR GVRQRPWGKW AAEIRDPLRR VRLWLGTYDT AEEAAMVYDN AAIQLRGADA  180
LTNFVTPPAR CSPAAAASGY ISGDESNSNH NVNNDNVNVS SPISVLRFSE EAESQSVGSS  240
RETRKAGNEV REVKEDSCVS ENFSDFSEHN SSIDSLFPPT TDIYEFQGSV RGIFEETTFF  300
ADGGFLKDDD FRDIDLDFGF RLSSWNGRDH FQDIGDLIWS DSLIAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20126184362ATERF1
3gcc_A5e-20126184362ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022557.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLA0A2K2B6M70.0A0A2K2B6M7_POPTR; Uncharacterized protein
STRINGPOPTR_0003s13610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.25e-45cytokinin response factor 2