PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021796.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 334aa    MW: 37583.4 Da    PI: 5.8773
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021796.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21e-091445132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     rg W++eEde+l+++++ +G g+W+ ++++ g
      CCG021796.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAG 45
                     788**************************998 PP
2Myb_DNA-binding53.17.1e-1790134147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+T+eE++l++ ++   G++ W+ Ia++++ gRt++++k++w+++
      CCG021796.1  90 RGRFTPEEEKLIISLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 134
                      89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.34984IPR017930Myb domain
SuperFamilySSF466891.7E-2511131IPR009057Homeodomain-like
SMARTSM007173.7E-81386IPR001005SANT/Myb domain
PfamPF002494.5E-111484IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-231591IPR009057Homeodomain-like
CDDcd001679.94E-91784No hitNo description
PROSITE profilePS5129425.71285139IPR017930Myb domain
SMARTSM007171.9E-1689137IPR001005SANT/Myb domain
PfamPF002491.7E-1590134IPR001005SANT/Myb domain
CDDcd001675.93E-1292135No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2592139IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGTCPSI PLFYHLFLVL  60
LLCLVSPGLQ RCGKSCRLRW INYLRPDIRR GRFTPEEEKL IISLHGVVGN RWAHIASHLP  120
GRTDNEIKNY WNSWIKKKIR KPSATATITN ATTSTDHSNI NYTSNQLDLG HQDLTRPQVQ  180
ETLFSSSAPL FMFDTSTASL DGIVDSSVRG ELFHDSASLN TETWNSSQHH HVQAVLPPQA  240
TFSIGMDTNY LPPLIDNMEN MVPIEMQSCS MNDEGEISLE CLQRQELNIE WVESQQCSNF  300
LFWDNVEGPL GGEEIVPTSS SMGAATLSSF PSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141397108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7700110.0KP770011.1 UNVERIFIED: Populus tomentosa NAC domain transcription factor-like (Potri.003G132000) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304517.10.0transcription factor MYB46 isoform X1
TrEMBLU5GJC20.0U5GJC2_POPTR; Uncharacterized protein
STRINGPOPTR_0003s13190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41123358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.11e-100myb domain protein 103