PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021940.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 271aa    MW: 30704.7 Da    PI: 7.7601
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021940.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.4e-29102161159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK+ k+++ pr+Y+rC++a +Cpvkkkv+r+ ed +v++ tY geHnhe
  CCG021940.1 102 VKDGYQWRKYGQKVTKDNPSPRAYFRCSMApNCPVKKKVQRCVEDDSVLVATYDGEHNHE 161
                  58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-2993161IPR003657WRKY domain
PROSITE profilePS5081124.85797163IPR003657WRKY domain
SuperFamilySSF1182901.31E-2599162IPR003657WRKY domain
SMARTSM007742.5E-34102162IPR003657WRKY domain
PfamPF031062.9E-24103161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEVFPSCKEK VDALQFELEH RQKENESLRF MLGVMTRRFS ILQAEIQETE EHQQKAVRNL  60
TEGDQACHEI LDSNKRARFE VPLTKASRIL VRSHSNDKSL VVKDGYQWRK YGQKVTKDNP  120
SPRAYFRCSM APNCPVKKKV QRCVEDDSVL VATYDGEHNH EPNGSHGQYL CYPNSSSSKI  180
SITNHVLKCP IEIPPLQPSV ALDLTLSSPG NQQKEKPSER SMEDCGKIYN NYNKNYIEEY  240
VASLTKDPNF SAALAAAVAS SMSDLSTSRM L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-1987161172WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1179340.0JN117934.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor (WRKY38) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036676.10.0PREDICTED: probable WRKY transcription factor 40
TrEMBLB9IL511e-175B9IL51_POPTR; Uncharacterized protein
STRINGPOPTR_0018s02480.11e-176(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-39WRKY DNA-binding protein 40