PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022190.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 193aa    MW: 22529.7 Da    PI: 8.7321
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022190.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.4e-1949102457
                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  ++++++eq++ Le  F +++++  e++ +LA +lgL+ rqV vWFqNrRa++k+
  CCG022190.1  49 KRKLNEEQVNLLEMNFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKN 102
                  45899***********************************************95 PP
2HD-ZIP_I/II105.15.4e-3448135288
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkee.nerLekeveeLr 88 
                  +kr+l++eqv+lLE++F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y+++k+++++++ + +e+L++  +e++
  CCG022190.1  48 RKRKLNEEQVNLLEMNFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKNKKLEEEYTKMKTSHENIVLKlKEQLSEAEKEIQ 135
                  8*********************************************************************976551445554444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.22843103IPR001356Homeobox domain
SMARTSM003891.3E-1746107IPR001356Homeobox domain
SuperFamilySSF466892.1E-1747110IPR009057Homeodomain-like
CDDcd000861.91E-1548104No hitNo description
PfamPF000462.6E-1649102IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.0E-2050110IPR009057Homeodomain-like
PRINTSPR000311.9E-57483IPR000047Helix-turn-helix motif
PROSITE patternPS00027078101IPR017970Homeobox, conserved site
PRINTSPR000311.9E-58399IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSYKVEDHMA LTSQLYPGVF TQMVPQQGES KPRRRRKKNK DAGLSGARKR KLNEEQVNLL  60
EMNFGNEHKL ESERKDKLAL ELGLDPRQVA VWFQNRRARW KNKKLEEEYT KMKTSHENIV  120
LKLKEQLSEA EKEIQRLSDR IDGVSTNSPS SSLSMAMDPP LLGEFAMEGY EDAFYMPPEN  180
NYIPGMEWIN LYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13350RRRKKNKDAGLSGARKRK
23550RKKNKDAGLSGARKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025724.11e-121PREDICTED: homeobox-leucine zipper protein ATHB-40
SwissprotO232081e-68ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A2K1ZNF31e-115A0A2K1ZNF3_POPTR; Uncharacterized protein
STRINGPOPTR_0007s12450.11e-115(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.15e-71homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]