PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG022196.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 536aa MW: 55885.8 Da PI: 8.3805

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG022196.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H CCG022196.1 72 FVCEICNKGFQRDQNLQLHRRGH 94 89*******************88 PP
2	zf-C2H2	11.1	0.0012	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + CCG022196.1 148 WKCDKCSKKYAVQSDWKAHSKIC 170 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.19E-7	71	94	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	71	94	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	72	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	72	94	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	113	143	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.9E-4	136	169	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.19E-7	143	168	No hit	No description
SMART	SM00355	150	148	168	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
MPVDLDNSST ASGEASVSSS GNQPPPPPPP QQQPPSKSAA TAKKKRNLPG MPDPEAEVIA 60 LSPKTLLATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSSKEVKK RVYVCPEPTC 120 VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG 180 TLFSRRDSFI THRAFCDALA EESARAQTQT PNPNPKPNQE SDPKVQVDSS PPPAPLPPPV 240 APDFGSGQGQ APPGLAQSTG MISSPVLAIQ SPELSDDPAQ IIEEAPAPAP APAPATVTAG 300 FNGNFSSSTS SSSNGSSTSS VFASLFASST ASGSLQAPQT TAFTDLIHAM AHPDRPTDLT 360 PSPTEPISLC LSTNHGSSIF GTAGQERRQY APPPQPAMSA TALLQKAAQM GAAATNASLL 420 RGLGIVSSSS SSAQPDNMQW GHRQMEPENA SVTAGLGLGL PCDGGSGLKE LMMGTPSVFG 480 PKHATLDFLG LGMAAGGSPS GGLSALITSI GGGLDVAAAA ASFGGGEFSG KDMRRS

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

MPVDLDNSST ASGEASVSSS GNQPPPPPPP QQQPPSKSAA TAKKKRNLPG MPDPEAEVIA  60
LSPKTLLATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSSKEVKK RVYVCPEPTC  120
VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG  180
TLFSRRDSFI THRAFCDALA EESARAQTQT PNPNPKPNQE SDPKVQVDSS PPPAPLPPPV  240
APDFGSGQGQ APPGLAQSTG MISSPVLAIQ SPELSDDPAQ IIEEAPAPAP APAPATVTAG  300
FNGNFSSSTS SSSNGSSTSS VFASLFASST ASGSLQAPQT TAFTDLIHAM AHPDRPTDLT  360
PSPTEPISLC LSTNHGSSIF GTAGQERRQY APPPQPAMSA TALLQKAAQM GAAATNASLL  420
RGLGIVSSSS SSAQPDNMQW GHRQMEPENA SVTAGLGLGL PCDGGSGLKE LMMGTPSVFG  480
PKHATLDFLG LGMAAGGSPS GGLSALITSI GGGLDVAAAA ASFGGGEFSG KDMRRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-35	144	212	3	71	Zinc finger protein JACKDAW
5b3h_F	1e-35	144	212	3	71	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011025733.1	0.0	PREDICTED: zinc finger protein NUTCRACKER-like
Swissprot	Q9LVQ7	0.0	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	U5G4W2	0.0	U5G4W2_POPTR; Uncharacterized protein
STRING	POPTR_0007s12520.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-142	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]