PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022316.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family DBB
Protein Properties Length: 185aa    MW: 20540.2 Da    PI: 6.6923
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022316.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41.1e-06433534
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                  C+ +e+  ++ fC  ++  lC  C ++ H
  CCG022316.1  4 LCDACESAAAIVFCAADEAALCLACDEKVH 33
                 6**************************998 PP
2zf-B_box32.71.5e-105291237
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                 + ++C+ +e+ ++ ++Ce++++ lC +C ++ H g    H
  CCG022316.1 52 DVPRCDICENAPAFFYCETDGSSLCLQCDMNVHVGgkrtH 91
                 6799****************************96655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
CDDcd000214.75E-6345No hitNo description
SMARTSM003361.8E-6447IPR000315B-box-type zinc finger
SuperFamilySSF578452.98E-54886No hitNo description
SMARTSM003361.3E-125196IPR000315B-box-type zinc finger
PROSITE profilePS501199.1435196IPR000315B-box-type zinc finger
PfamPF006433.6E-85291IPR000315B-box-type zinc finger
CDDcd000217.42E-85484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MRILCDACES AAAIVFCAAD EAALCLACDE KVHMCNKLAS RHVRVGLANP SDVPRCDICE  60
NAPAFFYCET DGSSLCLQCD MNVHVGGKRT HGRYLLLRQR VEFPGDKPQP DELHSQPMHP  120
GETRKGQNNP PKATAEEKRQ NRQVSPAPMS LSNSDGHDKV DKKMIDLNMK PQRTDHEQAS  180
NNQEL
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025917.11e-137PREDICTED: B-box zinc finger protein 18-like
SwissprotC0SVM58e-75BBX19_ARATH; B-box zinc finger protein 19
TrEMBLB9HFI71e-133B9HFI7_POPTR; Uncharacterized protein
STRINGPOPTR_0007s13830.11e-133(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.14e-66DBB family protein