PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022471.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRF
Protein Properties Length: 607aa    MW: 65924.1 Da    PI: 7.3881
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022471.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.31.3e-23233277145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  CCG022471.1 233 DQEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 277
                  689***************************************985 PP
2QLQ54.73e-19162198137
          QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  ++FT++Q++ L++Q+l+yKy+ a++PvP++L+ +++k
  CCG022471.1 162 GPFTPSQWMALEHQALIYKYITARVPVPSNLIIPLKK 198
                  59******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-11162198IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.3E-13163196IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.65163198IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.796233277IPR014977WRC domain
PfamPF088793.6E-20235276IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MDFGVLGLEG LVGPETSSEA PSHVSPPETK PKILGSVFSK RETSASSAQD DYSRTSKLPK  60
NDDFSVTKTM SLHQPTSLLR SNYKLSDDSR QQEHMMSFSS PRPERTPFLS KDGGLVERST  120
QNHTALSFPY HQNTASSYIR SAGYDTGGLN AGMHGPFTGV RGPFTPSQWM ALEHQALIYK  180
YITARVPVPS NLIIPLKKSV YPYGLPGSST GSFPHNSLGW SAFHLGYPGN NTDQEPGRCR  240
RTDGKKWRCS RDAVADQKYC ERHINRGRHR SRKPVEGQTG HAATGTASSK VVPMSNSMSK  300
LVITNGGASN RIAMTTQQQF KILQPAATNT SADVDVNRAQ DAQSISMMSS TINRKSDESS  360
FSVPKQDILM EQCSQTEFGF VSSDSLLNPS QKSSYINSKP YESFLNFNDE ESQDQHPLRQ  420
FIDEWPKDQS NCSVISWPEE LKSDWTQLSM SIPMAASDFS SSSSSPTQEK LALSPLSLSC  480
EFDPVQMGLR VSIDHNESSQ KQANWIPISW GTSIGGPLGE VLTTSTSHAD SCKSSSALSL  540
LREGCNGSPQ LGSSPTGVLQ KSTFCSLSNS SSGSSPRAES KKNNDTASLY EDVGGSIIAS  600
SSPIPSL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2826941e-150GU282694.1 Populus balsamifera isolate HAY07 haplotype A unknown protein gene, partial sequence.
GenBankGU2826951e-150GU282695.1 Populus balsamifera isolate HAY07 haplotype B unknown protein gene, partial sequence.
GenBankGU2826961e-150GU282696.1 Populus balsamifera isolate MGR10 haplotype A unknown protein gene, partial sequence.
GenBankGU2826971e-150GU282697.1 Populus balsamifera isolate MGR10 haplotype B unknown protein gene, partial sequence.
GenBankGU2826981e-150GU282698.1 Populus balsamifera isolate NWL07 haplotype A unknown protein gene, partial sequence.
GenBankGU2826991e-150GU282699.1 Populus balsamifera isolate NWL07 haplotype B unknown protein gene, partial sequence.
GenBankGU2827001e-150GU282700.1 Populus balsamifera isolate STL13 haplotype A unknown protein gene, partial sequence.
GenBankGU2827011e-150GU282701.1 Populus balsamifera isolate STL13 haplotype B unknown protein gene, partial sequence.
GenBankGU2827021e-150GU282702.1 Populus balsamifera isolate INU03 haplotype A unknown protein gene, partial sequence.
GenBankGU2827031e-150GU282703.1 Populus balsamifera isolate INU03 haplotype B unknown protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007851.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLB9IBM40.0B9IBM4_POPTR; Uncharacterized protein
STRINGPOPTR_0014s00780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-121growth-regulating factor 1